LOC_Os07g13170.2

Description : transcription factor (AP2)

Gene families : OG0000068 (Archaeplastida) Phylogenetic Tree(s): OG0000068_tree ,
OG_05_0000603 (LandPlants) Phylogenetic Tree(s): OG_05_0000603_tree ,
OG_06_0000543 (SeedPlants) Phylogenetic Tree(s): OG_06_0000543_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g13170.2
Cluster	HCCA: Cluster_278

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00086450	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00022p00238000	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AMTR_s00024p00227390	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00035p00205430	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AT3G20840	PLT1	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT3G54320	WRI1, ATWRI1, ASML1, WRI	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT4G36920	AP2, FLO2, FL1	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
AT4G37750	DRG, CKC, CKC1, ANT	Integrase-type DNA-binding superfamily protein	0.07	Archaeplastida
AT5G10510	PLT3, AIL6	AINTEGUMENTA-like 6	0.02	Archaeplastida
AT5G17430	BBM	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
AT5G65510	AIL7	AINTEGUMENTA-like 7	0.02	Archaeplastida
AT5G67180	TOE3	target of early activation tagged (EAT) 3	0.04	Archaeplastida
Cre08.g385350	No alias	No description available	0.03	Archaeplastida
Cre13.g602750	No alias	No description available	0.01	Archaeplastida
GSVIVT01016764001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.06	Archaeplastida
GSVIVT01029219001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
Gb_05487	No alias	transcription factor (AP2)	0.04	Archaeplastida
Gb_29561	No alias	transcription factor (AP2)	0.03	Archaeplastida
LOC_Os02g40070.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
LOC_Os03g07940.1	No alias	transcription factor (AP2)	0.04	Archaeplastida
LOC_Os03g12950.1	No alias	no description available(sp\|q84z02\|crl5_orysj : 102.0)	0.07	Archaeplastida
LOC_Os06g44750.1	No alias	transcription factor (AP2)	0.04	Archaeplastida
LOC_Os11g19060.1	No alias	transcription factor (AP2)	0.04	Archaeplastida
MA_113625g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
MA_121578g0010	No alias	transcription factor (AP2)	0.03	Archaeplastida
MA_196219g0010	No alias	transcription factor (AP2)	0.04	Archaeplastida
MA_86195g0010	No alias	transcription factor (AP2)	0.05	Archaeplastida
MA_98095g0010	No alias	transcription factor (AP2)	0.02	Archaeplastida
Mp7g13270.1	No alias	transcription factor (AP2)	0.04	Archaeplastida
Mp8g11450.1	No alias	transcription factor (AP2)	0.02	Archaeplastida
Pp3c15_4400V3.1	No alias	target of early activation tagged (EAT) 2	0.02	Archaeplastida
Pp3c9_25400V3.1	No alias	AINTEGUMENTA-like 5	0.02	Archaeplastida
Smo419668	No alias	No description available	0.02	Archaeplastida
Solyc02g064960.3.1	No alias	transcription factor (AP2)	0.02	Archaeplastida
Solyc02g092050.3.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
Solyc03g117720.3.1	No alias	transcription factor (AP2)	0.02	Archaeplastida
Solyc03g123430.4.1	No alias	transcription factor (AP2)	0.09	Archaeplastida
Solyc04g077490.3.1	No alias	transcription factor (AP2)	0.07	Archaeplastida
Solyc11g010710.2.1	No alias	transcription factor (AP2)	0.05	Archaeplastida
Zm00001e000558_P003	No alias	transcription factor (AP2)	0.03	Archaeplastida
Zm00001e005817_P003	No alias	transcription factor (AP2)	0.12	Archaeplastida
Zm00001e006752_P001	No alias	transcription factor (AP2)	0.06	Archaeplastida
Zm00001e009225_P003	No alias	transcription factor (AP2)	0.03	Archaeplastida
Zm00001e024044_P002	No alias	transcription factor (AP2)	0.03	Archaeplastida
Zm00001e027593_P003	No alias	transcription factor (AP2)	0.03	Archaeplastida
Zm00001e032754_P003	No alias	transcription factor (AP2)	0.12	Archaeplastida
Zm00001e037696_P002	No alias	transcription factor (AP2)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0010274	hydrotropism	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0032200	telomere organization	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
BP	GO:0042592	homeostatic process	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0060249	anatomical structure homeostasis	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	121	170
IPR001471	AP2/ERF_dom	213	263

External Links

No external refs found!

LOC_Os07g13170.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation