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Description : Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana (sp|q9m907|pp217_arath : 1052.0)
Gene families : OG0008888 (Archaeplastida) Phylogenetic Tree(s): OG0008888_tree ,
OG_05_0008600 (LandPlants) Phylogenetic Tree(s): OG_05_0008600_tree ,
OG_06_0007808 (SeedPlants) Phylogenetic Tree(s): OG_06_0007808_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os07g14530.3 | |
| Cluster | HCCA: Cluster_174 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Gb_36884 | No alias | Pentatricopeptide repeat-containing protein At3g06920... | 0.03 | Archaeplastida | |
| MA_60924g0010 | No alias | Pentatricopeptide repeat-containing protein At3g06920... | 0.04 | Archaeplastida | |
| Pp3c3_19780V3.1 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Neighborhood |
| MF | GO:0003919 | FMN adenylyltransferase activity | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006766 | vitamin metabolic process | IEP | Neighborhood |
| BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Neighborhood |
| BP | GO:0006771 | riboflavin metabolic process | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| BP | GO:0009110 | vitamin biosynthetic process | IEP | Neighborhood |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | Neighborhood |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Neighborhood |
| BP | GO:0018208 | peptidyl-proline modification | IEP | Neighborhood |
| BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Neighborhood |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| MF | GO:0070566 | adenylyltransferase activity | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 247 | 296 |
| IPR002885 | Pentatricopeptide_repeat | 701 | 750 |
| IPR002885 | Pentatricopeptide_repeat | 352 | 399 |
| IPR002885 | Pentatricopeptide_repeat | 599 | 645 |
| IPR002885 | Pentatricopeptide_repeat | 532 | 575 |
| IPR002885 | Pentatricopeptide_repeat | 771 | 817 |
| IPR002885 | Pentatricopeptide_repeat | 321 | 350 |
| IPR002885 | Pentatricopeptide_repeat | 494 | 524 |
| IPR002885 | Pentatricopeptide_repeat | 181 | 209 |
| IPR002885 | Pentatricopeptide_repeat | 217 | 242 |
| IPR002885 | Pentatricopeptide_repeat | 419 | 447 |
| IPR002885 | Pentatricopeptide_repeat | 662 | 694 |
| IPR002885 | Pentatricopeptide_repeat | 452 | 484 |
| No external refs found! |