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  5. AMTR_s00008p00214750

AMTR_s00008p00214750 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00008.135

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP I/II transcription factor


Gene families : OG0000146 (Archaeplastida) Phylogenetic Tree(s): OG0000146_tree ,
OG_05_0000061 (LandPlants) Phylogenetic Tree(s): OG_05_0000061_tree ,
OG_06_0000101 (SeedPlants) Phylogenetic Tree(s): OG_06_0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00008p00214750
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01038619001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
LOC_Os03g07450.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
LOC_Os03g08960.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
MA_130615g0020 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Mp3g02320.1 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Pp3c16_21410V3.1 No alias homeobox 1 0.04 Archaeplastida
Pp3c5_27150V3.1 No alias homeobox protein 16 0.03 Archaeplastida
Pp3c8_440V3.1 No alias homeobox 3 0.02 Archaeplastida
Smo19476 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
Solyc03g034120.3.1 No alias transcription factor (HD-ZIP I/II) 0.06 Archaeplastida
Solyc05g007180.3.1 No alias transcription factor (HD-ZIP I/II) 0.04 Archaeplastida
Zm00001e000659_P001 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Zm00001e004226_P001 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
InterPro domains Description Start Stop
IPR003106 Leu_zip_homeo 108 150
IPR001356 Homeobox_dom 53 106
No external refs found!