LOC_Os07g46190.1

Description : pectin methylesterase

Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0002214 (SeedPlants) Phylogenetic Tree(s): OG_06_0002214_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g46190.1
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
AT2G36710	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
GSVIVT01000525001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01009729001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.06	Archaeplastida
GSVIVT01015290001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01031250001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
MA_181657g0020	No alias	pectin methylesterase	0.02	Archaeplastida
Pp3c10_19460V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c18_13190V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c3_30560V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Solyc02g075620.4.1	No alias	pectin methylesterase	0.03	Archaeplastida
Solyc07g043240.4.1	No alias	pectin methylesterase	0.04	Archaeplastida
Solyc10g083820.2.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e035522_P001	No alias	pectin methylesterase	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005506	iron ion binding	IEP	Neighborhood
MF	GO:0008146	sulfotransferase activity	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	48	305

External Links

No external refs found!