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  5. LOC_Os07g48560.1

LOC_Os07g48560.1


Description : transcription factor (WOX)


Gene families : OG0000425 (Archaeplastida) Phylogenetic Tree(s): OG0000425_tree ,
OG_05_0000212 (LandPlants) Phylogenetic Tree(s): OG_05_0000212_tree ,
OG_06_0001039 (SeedPlants) Phylogenetic Tree(s): OG_06_0001039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g48560.1
Cluster HCCA: Cluster_288

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00122680 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
AMTR_s00012p00149750 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AMTR_s00021p00189010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00023p00181320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
AMTR_s00051p00020930 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
AMTR_s00405p00009920 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AT2G01500 PFS2, HOS9, WOX6 Homeodomain-like superfamily protein 0.03 Archaeplastida
AT2G17950 WUS, PGA6, WUS1 Homeodomain-like superfamily protein 0.03 Archaeplastida
AT2G28610 WOX3, PRS1, PRS Homeodomain-like superfamily protein 0.05 Archaeplastida
AT2G33880 STIP, HB-3, WOX9 homeobox-3 0.04 Archaeplastida
AT3G03660 WOX11 WUSCHEL related homeobox 11 0.03 Archaeplastida
AT3G11260 WOX5 WUSCHEL related homeobox 5 0.03 Archaeplastida
AT3G18010 WOX1 WUSCHEL related homeobox 1 0.04 Archaeplastida
AT5G46010 No alias Homeodomain-like superfamily protein 0.04 Archaeplastida
GSVIVT01008424001 No alias RNA biosynthesis.transcriptional activation.HB... 0.07 Archaeplastida
GSVIVT01009453001 No alias RNA biosynthesis.transcriptional activation.HB... 0.07 Archaeplastida
GSVIVT01016360001 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
GSVIVT01021144001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01029942001 No alias RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
Gb_01484 No alias transcription factor (WOX) 0.03 Archaeplastida
Gb_07187 No alias transcription factor (WOX) 0.03 Archaeplastida
Gb_29958 No alias transcription factor (WOX) 0.02 Archaeplastida
Gb_36701 No alias transcription factor (WOX) 0.02 Archaeplastida
LOC_Os03g20910.1 No alias transcription factor (WOX) 0.05 Archaeplastida
MA_10344604g0010 No alias transcription factor (WOX) 0.05 Archaeplastida
MA_121643g0010 No alias transcription factor (WOX) 0.03 Archaeplastida
MA_1910g0010 No alias transcription factor (WOX) 0.05 Archaeplastida
MA_8832398g0010 No alias transcription factor (WOX) 0.07 Archaeplastida
MA_8850184g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_921642g0010 No alias transcription factor (WOX) 0.03 Archaeplastida
Solyc02g077390.2.1 No alias transcription factor (WOX) 0.06 Archaeplastida
Solyc03g096300.3.1 No alias transcription factor (WOX) 0.03 Archaeplastida
Solyc04g078650.4.1 No alias transcription factor (WOX) 0.03 Archaeplastida
Solyc06g075567.1.1 No alias transcription factor (WOX) 0.05 Archaeplastida
Solyc11g072770.2.1 No alias transcription factor (WOX) 0.06 Archaeplastida
Solyc11g072790.2.1 No alias transcription factor (WOX) 0.05 Archaeplastida
Zm00001e001527_P001 No alias transcription factor (WOX) 0.02 Archaeplastida
Zm00001e009121_P001 No alias transcription factor (WOX) 0.03 Archaeplastida
Zm00001e024169_P001 No alias transcription factor (WOX) 0.04 Archaeplastida
Zm00001e028720_P001 No alias transcription factor (WOX) 0.03 Archaeplastida
Zm00001e038272_P001 No alias transcription factor (WOX) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 20 80
No external refs found!