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  5. LOC_Os08g01930.1

LOC_Os08g01930.1


Description : no hits & (original description: none)


Gene families : OG0001895 (Archaeplastida) Phylogenetic Tree(s): OG0001895_tree ,
OG_05_0001910 (LandPlants) Phylogenetic Tree(s): OG_05_0001910_tree ,
OG_06_0001734 (SeedPlants) Phylogenetic Tree(s): OG_06_0001734_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g01930.1
Cluster HCCA: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
AT1G33680 No alias KH domain-containing protein 0.04 Archaeplastida
AT2G25970 No alias KH domain-containing protein 0.03 Archaeplastida
AT4G10070 No alias KH domain-containing protein 0.02 Archaeplastida
Cre06.g250800 No alias No description available 0.02 Archaeplastida
GSVIVT01036378001 No alias No description available 0.04 Archaeplastida
MA_10434164g0020 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_13061g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c11_17830V3.1 No alias KH domain-containing protein 0.02 Archaeplastida
Pp3c7_11410V3.1 No alias KH domain-containing protein 0.03 Archaeplastida
Solyc11g040370.2.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc12g095960.3.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e014452_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e024927_P001 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e029163_P001 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005849 mRNA cleavage factor complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071586 CAAX-box protein processing IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 248 314
IPR004088 KH_dom_type_1 155 219
No external refs found!