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  5. LOC_Os08g02210.2

LOC_Os08g02210.2


Description : Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana (sp|q7xa78|d27_arath : 161.0)


Gene families : OG0001228 (Archaeplastida) Phylogenetic Tree(s): OG0001228_tree ,
OG_05_0002282 (LandPlants) Phylogenetic Tree(s): OG_05_0002282_tree ,
OG_06_0003035 (SeedPlants) Phylogenetic Tree(s): OG_06_0003035_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g02210.2
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00255680 evm_27.TU.AmTr_v1... Beta-carotene isomerase D27, chloroplastic... 0.08 Archaeplastida
AT1G64680 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.11 Archaeplastida
AT4G01995 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.02 Archaeplastida
GSVIVT01019663001 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.07 Archaeplastida
GSVIVT01028138001 No alias Beta-carotene isomerase D27, chloroplastic... 0.08 Archaeplastida
MA_167711g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_18999g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp2g07180.1 No alias Beta-carotene isomerase D27, chloroplastic... 0.03 Archaeplastida
Mp6g01750.1 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.02 Archaeplastida
Mp6g03970.1 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.02 Archaeplastida
Mp7g16410.1 No alias Beta-carotene isomerase D27, chloroplastic... 0.02 Archaeplastida
Pp3c26_11090V3.1 No alias No annotation 0.08 Archaeplastida
Pp3c4_23850V3.1 No alias No annotation 0.01 Archaeplastida
Smo99098 No alias Beta-carotene isomerase D27, chloroplastic... 0.02 Archaeplastida
Smo99956 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.03 Archaeplastida
Solyc06g084610.4.1 No alias Beta-carotene isomerase D27, chloroplastic... 0.04 Archaeplastida
Solyc08g008630.4.1 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.1 Archaeplastida
Zm00001e029191_P001 No alias Beta-carotene isomerase D27, chloroplastic... 0.06 Archaeplastida
Zm00001e040329_P004 No alias Beta-carotene isomerase D27, chloroplastic... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001505 regulation of neurotransmitter levels IEP Neighborhood
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Neighborhood
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006090 pyruvate metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006544 glycine metabolic process IEP Neighborhood
BP GO:0006546 glycine catabolic process IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
BP GO:0006751 glutathione catabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009063 cellular amino acid catabolic process IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009071 serine family amino acid catabolic process IEP Neighborhood
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
BP GO:0016054 organic acid catabolic process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Neighborhood
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
MF GO:0016842 amidine-lyase activity IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0042133 neurotransmitter metabolic process IEP Neighborhood
BP GO:0042135 neurotransmitter catabolic process IEP Neighborhood
BP GO:0042219 cellular modified amino acid catabolic process IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0043171 peptide catabolic process IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0044273 sulfur compound catabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0046395 carboxylic acid catabolic process IEP Neighborhood
BP GO:0046490 isopentenyl diphosphate metabolic process IEP Neighborhood
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP Neighborhood
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0071586 CAAX-box protein processing IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0090407 organophosphate biosynthetic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901606 alpha-amino acid catabolic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR025114 DUF4033 151 233
No external refs found!