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  5. LOC_Os08g06120.1

LOC_Os08g06120.1


Description : transcription factor (RAV/NGATHA)


Gene families : OG0000363 (Archaeplastida) Phylogenetic Tree(s): OG0000363_tree ,
OG_05_0000191 (LandPlants) Phylogenetic Tree(s): OG_05_0000191_tree ,
OG_06_0020671 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g06120.1
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00238950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
AMTR_s00013p00108490 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AMTR_s00018p00040300 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
AT1G50680 No alias AP2/B3 transcription factor family protein 0.03 Archaeplastida
AT1G68840 EDF2, AtRAV2,... related to ABI3/VP1 2 0.04 Archaeplastida
AT2G36080 No alias AP2/B3-like transcriptional factor family protein 0.02 Archaeplastida
AT2G46870 NGA1 AP2/B3-like transcriptional factor family protein 0.02 Archaeplastida
AT3G11580 No alias AP2/B3-like transcriptional factor family protein 0.03 Archaeplastida
GSVIVT01011947001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
GSVIVT01019699001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01033902001 No alias RNA biosynthesis.transcriptional activation.B3... 0.06 Archaeplastida
Gb_18035 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
LOC_Os01g04800.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.05 Archaeplastida
LOC_Os05g47650.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.08 Archaeplastida
LOC_Os11g05740.1 No alias transcription factor (RAV/NGATHA) 0.04 Archaeplastida
LOC_Os12g06080.1 No alias transcription factor (RAV/NGATHA) 0.04 Archaeplastida
MA_10428163g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
MA_116574g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
MA_178646g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
MA_18923g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
MA_246350g0010 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
MA_3834g0010 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
MA_5039g0010 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
MA_70029g0010 No alias transcription factor (RAV/NGATHA) 0.04 Archaeplastida
MA_953813g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp2g22250.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
Pp3c1_16700V3.1 No alias related to ABI3/VP1 1 0.03 Archaeplastida
Pp3c2_23660V3.1 No alias AP2/B3 transcription factor family protein 0.03 Archaeplastida
Solyc04g007000.2.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
Solyc10g083210.2.1 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
Solyc12g098460.2.1 No alias AP2/ERF and B3 domain-containing transcription factor... 0.03 Archaeplastida
Zm00001e000156_P001 No alias transcription factor (RAV/NGATHA) 0.01 Archaeplastida
Zm00001e016956_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 Archaeplastida
Zm00001e020092_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
Zm00001e024165_P001 No alias transcription factor (RAV/NGATHA) 0.04 Archaeplastida
Zm00001e026443_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.05 Archaeplastida
Zm00001e032325_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.06 Archaeplastida
Zm00001e038099_P001 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
Zm00001e039393_P002 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
Zm00001e040214_P001 No alias transcription factor (RAV/NGATHA) 0.07 Archaeplastida
Zm00001e041372_P001 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010167 response to nitrate IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
BP GO:0015706 nitrate transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901698 response to nitrogen compound IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 71 160
No external refs found!