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  5. AMTR_s00009p00143340

AMTR_s00009p00143340 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.83

Description : RNA biosynthesis.transcriptional activation.AP2/ERF superfamily.ERF-type transcription factor


Gene families : OG0000003 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000001 (LandPlants) Phylogenetic Tree(s): OG_05_0000001_tree ,
OG_06_0000066 (SeedPlants) Phylogenetic Tree(s): OG_06_0000066_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00143340
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01002262001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
GSVIVT01013905001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
GSVIVT01013913001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
GSVIVT01013916001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.05 Archaeplastida
GSVIVT01013918001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
GSVIVT01013935001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
GSVIVT01019519001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 Archaeplastida
GSVIVT01021098001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
Gb_01210 No alias transcription factor (DREB) 0.03 Archaeplastida
Gb_01211 No alias transcription factor (DREB) 0.03 Archaeplastida
Gb_01215 No alias transcription factor (DREB) 0.03 Archaeplastida
Gb_07474 No alias transcription factor (ERF) 0.03 Archaeplastida
Gb_34848 No alias transcription factor (ERF) 0.03 Archaeplastida
LOC_Os04g55520.1 No alias transcription factor (DREB) 0.05 Archaeplastida
MA_10242823g0010 No alias transcription factor (DREB) 0.03 Archaeplastida
MA_10343854g0010 No alias transcription factor (DREB) 0.04 Archaeplastida
MA_166248g0020 No alias transcription factor (ERF) 0.03 Archaeplastida
MA_23271g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_55226g0020 No alias Ethylene-responsive transcription factor ERF016... 0.02 Archaeplastida
MA_71018g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_88g0020 No alias transcription factor (DREB) 0.03 Archaeplastida
Mp4g22290.1 No alias transcription factor (DREB) 0.02 Archaeplastida
Pp3c11_10660V3.1 No alias Integrase-type DNA-binding superfamily protein 0.02 Archaeplastida
Solyc10g076380.2.1 No alias transcription factor (DREB) 0.05 Archaeplastida
Solyc12g056590.2.1 No alias transcription factor (ERF) 0.03 Archaeplastida
Zm00001e006604_P001 No alias transcription factor (ERF) 0.03 Archaeplastida
Zm00001e013685_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e014413_P001 No alias transcription factor (DREB) 0.03 Archaeplastida
Zm00001e021579_P001 No alias Pathogenesis-related genes transcriptional activator... 0.02 Archaeplastida
Zm00001e027351_P001 No alias transcription factor (ERF) 0.02 Archaeplastida
Zm00001e032033_P001 No alias transcription factor (ERF) 0.02 Archaeplastida
Zm00001e040033_P001 No alias No annotation 0.02 Archaeplastida
Zm00001e041532_P001 No alias transcription factor (DREB) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 133 184
No external refs found!