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  5. LOC_Os08g09230.1

LOC_Os08g09230.1


Description : starch synthase (SSIII)


Gene families : OG0000161 (Archaeplastida) Phylogenetic Tree(s): OG0000161_tree ,
OG_05_0005539 (LandPlants) Phylogenetic Tree(s): OG_05_0005539_tree ,
OG_06_0066120 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g09230.1
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT1G11720 ATSS3, SS3 starch synthase 3 0.03 Archaeplastida
AT5G24300 SSI1, ATSS1, SSI Glycogen/starch synthases, ADP-glucose type 0.03 Archaeplastida
Cpa|evm.model.tig00021332.13 No alias Granule-bound starch synthase 1,... 0.01 Archaeplastida
Cre06.g282000 No alias Carbohydrate metabolism.starch... 0.01 Archaeplastida
Cre16.g665800 No alias Probable starch synthase 4, chloroplastic/amyloplastic... 0.02 Archaeplastida
GSVIVT01019680001 No alias Carbohydrate metabolism.starch... 0.02 Archaeplastida
Gb_24148 No alias Probable starch synthase 4, chloroplastic/amyloplastic... 0.03 Archaeplastida
LOC_Os06g06560.1 No alias starch synthase (SSI) 0.01 Archaeplastida
MA_10429460g0020 No alias Granule-bound starch synthase 1,... 0.02 Archaeplastida
MA_482181g0010 No alias Soluble starch synthase 1, chloroplastic/amyloplastic... 0.04 Archaeplastida
Mp1g23640.1 No alias granule-bound starch (amylose) synthase 0.03 Archaeplastida
Mp3g25350.1 No alias starch synthase (SSI) 0.02 Archaeplastida
Pp3c21_6821V3.1 No alias starch synthase 2 0.03 Archaeplastida
Pp3c9_14980V3.1 No alias starch synthase 4 0.01 Archaeplastida
Zm00001e030868_P001 No alias starch synthase (SSII) 0.06 Archaeplastida
Zm00001e036589_P003 No alias granule-bound starch (amylose) synthase 0.03 Archaeplastida
Zm00001e039962_P001 No alias starch synthase (SSIII) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:2001070 starch binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004645 phosphorylase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
MF GO:0008184 glycogen phosphorylase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
InterPro domains Description Start Stop
IPR013534 Starch_synth_cat_dom 1341 1528
IPR005085 CBM25 1083 1168
IPR005085 CBM25 1245 1330
IPR005085 CBM25 909 989
No external refs found!