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  5. LOC_Os08g32620.1

LOC_Os08g32620.1


Description : component BAH of BAH-EMF1 Polycomb silencing complex


Gene families : OG0000832 (Archaeplastida) Phylogenetic Tree(s): OG0000832_tree ,
OG_05_0001161 (LandPlants) Phylogenetic Tree(s): OG_05_0001161_tree ,
OG_06_0001820 (SeedPlants) Phylogenetic Tree(s): OG_06_0001820_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g32620.1
Cluster HCCA: Cluster_336

Target Alias Description ECC score Gene Family Method Actions
Cre16.g675246 No alias Chromatin organisation.histone modifications.histone... 0.01 Archaeplastida
GSVIVT01004809001 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Mp4g18520.1 No alias component BAH of BAH-EMF1 Polycomb silencing complex 0.02 Archaeplastida
Pp3c6_15430V3.1 No alias PHD finger family protein / bromo-adjacent homology... 0.02 Archaeplastida
Smo412601 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Solyc02g081130.3.1 No alias component BAH of BAH-EMF1 Polycomb silencing complex 0.04 Archaeplastida
Solyc05g042030.3.1 No alias component BAH of BAH-EMF1 Polycomb silencing complex 0.03 Archaeplastida
Zm00001e009779_P001 No alias component BAH of BAH-EMF1 Polycomb silencing complex 0.02 Archaeplastida
Zm00001e022395_P003 No alias component BAH of BAH-EMF1 Polycomb silencing complex 0.04 Archaeplastida
Zm00001e034034_P004 No alias component BAH of BAH-EMF1 Polycomb silencing complex 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006282 regulation of DNA repair IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0080134 regulation of response to stress IEP Neighborhood
BP GO:0080135 regulation of cellular response to stress IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001020 regulation of response to DNA damage stimulus IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001025 BAH_dom 23 135
IPR019787 Znf_PHD-finger 140 188
No external refs found!