Coexpression cluster: Cluster_336 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003690 double-stranded DNA binding 5.33% (4/75) 5.64 1e-06 0.000283
GO:0006351 transcription, DNA-templated 5.33% (4/75) 4.68 1.9e-05 0.001394
GO:0097659 nucleic acid-templated transcription 5.33% (4/75) 4.68 1.9e-05 0.001394
GO:0016070 RNA metabolic process 8.0% (6/75) 3.13 6.6e-05 0.003586
GO:0032774 RNA biosynthetic process 5.33% (4/75) 4.14 8.3e-05 0.003626
GO:0019438 aromatic compound biosynthetic process 5.33% (4/75) 2.96 0.001789 0.02167
GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity 1.33% (1/75) 9.14 0.001778 0.022797
GO:0019213 deacetylase activity 1.33% (1/75) 9.14 0.001778 0.022797
GO:0090304 nucleic acid metabolic process 8.0% (6/75) 2.52 0.000649 0.023579
GO:0009059 macromolecule biosynthetic process 6.67% (5/75) 2.48 0.00209 0.023978
GO:0065007 biological regulation 10.67% (8/75) 1.87 0.001546 0.024071
GO:0050789 regulation of biological process 10.67% (8/75) 1.99 0.000898 0.02446
GO:0034645 cellular macromolecule biosynthetic process 6.67% (5/75) 2.6 0.001459 0.02446
GO:0019222 regulation of metabolic process 9.33% (7/75) 2.08 0.001371 0.024898
GO:0018130 heterocycle biosynthetic process 5.33% (4/75) 2.98 0.001723 0.025036
GO:0006139 nucleobase-containing compound metabolic process 8.0% (6/75) 2.16 0.002308 0.025155
GO:0055029 nuclear DNA-directed RNA polymerase complex 1.33% (1/75) 7.55 0.005324 0.02523
GO:0000428 DNA-directed RNA polymerase complex 1.33% (1/75) 7.55 0.005324 0.02523
GO:0003714 transcription corepressor activity 1.33% (1/75) 7.55 0.005324 0.02523
GO:0009245 lipid A biosynthetic process 1.33% (1/75) 7.55 0.005324 0.02523
GO:1901271 lipooligosaccharide biosynthetic process 1.33% (1/75) 7.55 0.005324 0.02523
GO:1901269 lipooligosaccharide metabolic process 1.33% (1/75) 7.55 0.005324 0.02523
GO:0046493 lipid A metabolic process 1.33% (1/75) 7.55 0.005324 0.02523
GO:0005666 RNA polymerase III complex 1.33% (1/75) 7.55 0.005324 0.02523
GO:0031323 regulation of cellular metabolic process 8.0% (6/75) 1.88 0.0058 0.025287
GO:1901576 organic substance biosynthetic process 8.0% (6/75) 1.88 0.00577 0.025669
GO:0051171 regulation of nitrogen compound metabolic process 8.0% (6/75) 1.89 0.00571 0.025933
GO:0080090 regulation of primary metabolic process 8.0% (6/75) 1.89 0.00571 0.025933
GO:0060255 regulation of macromolecule metabolic process 9.33% (7/75) 2.08 0.001329 0.026341
GO:0034654 nucleobase-containing compound biosynthetic process 5.33% (4/75) 3.25 0.00085 0.02647
GO:0003677 DNA binding 8.0% (6/75) 1.86 0.006232 0.026641
GO:0003712 transcription coregulator activity 2.67% (2/75) 5.28 0.001227 0.026753
GO:1901362 organic cyclic compound biosynthetic process 5.33% (4/75) 2.81 0.002615 0.027149
GO:0010468 regulation of gene expression 9.33% (7/75) 2.12 0.001137 0.027532
GO:1901360 organic cyclic compound metabolic process 8.0% (6/75) 1.98 0.004191 0.027685
GO:0019219 regulation of nucleobase-containing compound metabolic process 8.0% (6/75) 1.98 0.004144 0.028229
GO:0031326 regulation of cellular biosynthetic process 8.0% (6/75) 1.92 0.005055 0.029001
GO:2000112 regulation of cellular macromolecule biosynthetic process 8.0% (6/75) 1.92 0.005055 0.029001
GO:0010556 regulation of macromolecule biosynthetic process 8.0% (6/75) 1.92 0.005055 0.029001
GO:0009889 regulation of biosynthetic process 8.0% (6/75) 1.92 0.005055 0.029001
GO:0044249 cellular biosynthetic process 8.0% (6/75) 1.96 0.004532 0.02906
GO:0034641 cellular nitrogen compound metabolic process 9.33% (7/75) 1.79 0.004139 0.02911
GO:0006383 transcription by RNA polymerase III 1.33% (1/75) 7.14 0.007092 0.029733
GO:0003676 nucleic acid binding 12.0% (9/75) 1.52 0.004119 0.029935
GO:0044271 cellular nitrogen compound biosynthetic process 6.67% (5/75) 2.25 0.004091 0.030752
GO:1903506 regulation of nucleic acid-templated transcription 8.0% (6/75) 1.99 0.004074 0.031717
GO:2001141 regulation of RNA biosynthetic process 8.0% (6/75) 1.99 0.004074 0.031717
GO:0051252 regulation of RNA metabolic process 8.0% (6/75) 1.99 0.004074 0.031717
GO:0006355 regulation of transcription, DNA-templated 8.0% (6/75) 1.99 0.004074 0.031717
GO:0050794 regulation of cellular process 9.33% (7/75) 1.85 0.00324 0.032106
GO:0046483 heterocycle metabolic process 8.0% (6/75) 2.03 0.003566 0.033798
GO:0006725 cellular aromatic compound metabolic process 8.0% (6/75) 2.01 0.00378 0.034339
GO:0009058 biosynthetic process 8.0% (6/75) 1.73 0.009467 0.038942
GO:0007264 small GTPase mediated signal transduction 1.33% (1/75) 6.55 0.01062 0.042092
GO:0030880 RNA polymerase complex 1.33% (1/75) 6.55 0.01062 0.042092
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_38 0.041 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_91 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_109 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_152 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_245 0.024 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_248 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_27 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_106 0.03 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_231 0.028 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_245 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_249 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_259 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_212 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_267 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_6 0.027 Archaeplastida Compare
Zea mays HCCA Cluster_70 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_132 0.027 Archaeplastida Compare
Zea mays HCCA Cluster_177 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_181 0.049 Archaeplastida Compare
Zea mays HCCA Cluster_201 0.038 Archaeplastida Compare
Zea mays HCCA Cluster_225 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_234 0.027 Archaeplastida Compare
Zea mays HCCA Cluster_275 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_283 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_343 0.031 Archaeplastida Compare
Zea mays HCCA Cluster_345 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_355 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_363 0.024 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_68 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_125 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_286 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_295 0.029 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.029 Archaeplastida Compare
Picea abies HCCA Cluster_478 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_503 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_520 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_41 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_93 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_101 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_120 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_347 0.025 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_215 0.032 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_202 0.032 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_245 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_260 0.028 Archaeplastida Compare
Vitis vinifera HCCA Cluster_63 0.028 Archaeplastida Compare
Vitis vinifera HCCA Cluster_125 0.02 Archaeplastida Compare
Sequences (75) (download table)

InterPro Domains

GO Terms

Family Terms