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  5. LOC_Os08g37350.1

LOC_Os08g37350.1


Description : deubiquitinase (UBP15-21)


Gene families : OG0000242 (Archaeplastida) Phylogenetic Tree(s): OG0000242_tree ,
OG_05_0000881 (LandPlants) Phylogenetic Tree(s): OG_05_0000881_tree ,
OG_06_0001276 (SeedPlants) Phylogenetic Tree(s): OG_06_0001276_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g37350.1
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00220330 evm_27.TU.AmTr_v1... Protein degradation.peptidase families.cysteine-type... 0.04 Archaeplastida
GSVIVT01033166001 No alias Protein degradation.peptidase families.cysteine-type... 0.05 Archaeplastida
LOC_Os06g44380.1 No alias deubiquitinase (UBP15-21) 0.04 Archaeplastida
MA_10246077g0010 No alias Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis... 0.02 Archaeplastida
MA_132593g0020 No alias Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis... 0.03 Archaeplastida
MA_53569g0010 No alias deubiquitinase (UBP23) 0.03 Archaeplastida
Pp3c13_23560V3.1 No alias ubiquitin-specific protease 25 0.03 Archaeplastida
Pp3c5_25690V3.1 No alias ubiquitin-specific protease 18 0.03 Archaeplastida
Pp3c7_9250V3.1 No alias ubiquitin-specific protease 23 0.04 Archaeplastida
Zm00001e003832_P001 No alias deubiquitinase (UBP15-21) 0.05 Archaeplastida
Zm00001e014332_P001 No alias deubiquitinase (UBP15-21) 0.03 Archaeplastida
Zm00001e022516_P001 No alias deubiquitinase (UBP15-21) 0.07 Archaeplastida
Zm00001e024878_P003 No alias deubiquitinase (UBP15-21) 0.03 Archaeplastida
Zm00001e027381_P003 No alias deubiquitinase (UBP25) 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0016579 protein deubiquitination IEA Interproscan
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 450 753
IPR002893 Znf_MYND 123 160
No external refs found!