LOC_Os08g40900.1

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0005597 (LandPlants) Phylogenetic Tree(s): OG_05_0005597_tree ,
OG_06_0002193 (SeedPlants) Phylogenetic Tree(s): OG_06_0002193_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g40900.1
Cluster	HCCA: Cluster_326

Target	Alias	Description	ECC score	Gene Family Method
AT5G20730	TIR5, MSG1,...	Transcriptional factor B3 family protein /...	0.03	Archaeplastida
GSVIVT01008639001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
MA_10022392g0010	No alias	transcription factor (ARF)	0.03	Archaeplastida
MA_103763g0010	No alias	Auxin response factor 6 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_85955g0020	No alias	transcription factor (ARF)	0.04	Archaeplastida
Mp2g02890.1	No alias	Auxin response factor 19 OS=Oryza sativa subsp. japonica...	0.01	Archaeplastida
Pp3c2_25890V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Zm00001e013191_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	motor activity	IEP	Neighborhood
MF	GO:0003855	3-dehydroquinate dehydratase activity	IEP	Neighborhood
MF	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	IEP	Neighborhood
MF	GO:0004764	shikimate 3-dehydrogenase (NADP+) activity	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
CC	GO:0016459	myosin complex	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016836	hydro-lyase activity	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
CC	GO:0044430	cytoskeletal part	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	132	233
IPR033389	AUX/IAA_dom	988	1083
IPR010525	Auxin_resp	258	341

External Links

No external refs found!

LOC_Os08g40900.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation