LOC_Os08g41100.1

Description : CTL cellulose microfibrils and hemicellulose interaction protein

Gene families : OG0000104 (Archaeplastida) Phylogenetic Tree(s): OG0000104_tree ,
OG_05_0002919 (LandPlants) Phylogenetic Tree(s): OG_05_0002919_tree ,
OG_06_0003490 (SeedPlants) Phylogenetic Tree(s): OG_06_0003490_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g41100.1
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
AT1G02360	No alias	Chitinase family protein	0.03	Archaeplastida
AT1G05850	HOT2, ELP,...	Chitinase family protein	0.03	Archaeplastida
AT2G43580	No alias	Chitinase family protein	0.02	Archaeplastida
AT2G43620	No alias	Chitinase family protein	0.02	Archaeplastida
AT3G16920	CTL2, ATCTL2	chitinase-like protein 2	0.04	Archaeplastida
AT3G54420	ATEP3, EP3,...	homolog of carrot EP3-3 chitinase	0.04	Archaeplastida
GSVIVT01035029001	No alias	Cell wall.cellulose.synthesis.cellulose microfibrils and...	0.07	Archaeplastida
GSVIVT01038120001	No alias	Endochitinase EP3 OS=Arabidopsis thaliana	0.04	Archaeplastida
Gb_05672	No alias	CTL cellulose microfibrils and hemicellulose interaction protein	0.06	Archaeplastida
Gb_07463	No alias	Chitinase 4 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
Gb_07465	No alias	Chitinase 4 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
Gb_10203	No alias	CTL cellulose microfibrils and hemicellulose interaction protein	0.07	Archaeplastida
Gb_10245	No alias	CTL cellulose microfibrils and hemicellulose interaction protein	0.04	Archaeplastida
Gb_14115	No alias	Endochitinase A2 OS=Pisum sativum (sp\|p21226\|chi2_pea : 405.0)	0.02	Archaeplastida
Gb_29992	No alias	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
Gb_29994	No alias	Endochitinase A OS=Zea mays (sp\|p29022\|chia_maize : 88.6)	0.02	Archaeplastida
MA_10313114g0010	No alias	Endochitinase B OS=Nicotiana tabacum...	0.02	Archaeplastida
MA_295712g0010	No alias	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.03	Archaeplastida
MA_4984466g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_726207g0010	No alias	Chitinase-like protein 1 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Mp4g01780.1	No alias	Endochitinase CH5B OS=Phaseolus vulgaris...	0.04	Archaeplastida
Pp3c26_2880V3.1	No alias	Chitinase family protein	0.02	Archaeplastida
Smo14768	No alias	Chitinase 2 OS=Oryza sativa subsp. japonica	0.03	Archaeplastida
Smo227948	No alias	Cell wall.cellulose.synthesis.cellulose microfibrils and...	0.05	Archaeplastida
Solyc04g072000.4.1	No alias	Endochitinase EP3 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Solyc10g055780.1.1	No alias	Endochitinase B OS=Nicotiana tabacum...	0.02	Archaeplastida
Solyc10g055810.2.1	No alias	Basic 30 kDa endochitinase OS=Solanum lycopersicum...	0.03	Archaeplastida
Solyc10g074440.2.1	No alias	Endochitinase OS=Solanum tuberosum (sp\|p05315\|chit_soltu : 491.0)	0.03	Archaeplastida
Zm00001e013318_P001	No alias	Chitinase 9 OS=Oryza sativa subsp. japonica...	0.04	Archaeplastida
Zm00001e027534_P001	No alias	Chitinase 10 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
Zm00001e034566_P001	No alias	CTL cellulose microfibrils and hemicellulose interaction protein	0.13	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004568	chitinase activity	IEA	Interproscan
BP	GO:0006022	aminoglycan metabolic process	None	Extended
BP	GO:0006026	aminoglycan catabolic process	None	Extended
BP	GO:0006030	chitin metabolic process	None	Extended
BP	GO:0006032	chitin catabolic process	IEA	Interproscan
BP	GO:0006040	amino sugar metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0016998	cell wall macromolecule catabolic process	IEA	Interproscan
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0042737	drug catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046348	amino sugar catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901071	glucosamine-containing compound metabolic process	None	Extended
BP	GO:1901072	glucosamine-containing compound catabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901136	carbohydrate derivative catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Neighborhood
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Neighborhood
MF	GO:0003871	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	IEP	Neighborhood
MF	GO:0003993	acid phosphatase activity	IEP	Neighborhood
MF	GO:0004150	dihydroneopterin aldolase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006555	methionine metabolic process	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006790	sulfur compound metabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	IEP	Neighborhood
MF	GO:0008113	peptide-methionine (S)-S-oxide reductase activity	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008172	S-methyltransferase activity	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009086	methionine biosynthetic process	IEP	Neighborhood
MF	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0015020	glucuronosyltransferase activity	IEP	Neighborhood
BP	GO:0015858	nucleoside transport	IEP	Neighborhood
BP	GO:0015931	nucleobase-containing compound transport	IEP	Neighborhood
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	Neighborhood
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016832	aldehyde-lyase activity	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
MF	GO:0042085	5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:1901264	carbohydrate derivative transport	IEP	Neighborhood
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Neighborhood
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Neighborhood
BP	GO:1901642	nucleoside transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000726	Glyco_hydro_19_cat	67	301

External Links

No external refs found!

LOC_Os08g41100.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation