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  5. LOC_Os08g43540.1

LOC_Os08g43540.1


Description : component alpha type-4 of 26S proteasome


Gene families : OG0003804 (Archaeplastida) Phylogenetic Tree(s): OG0003804_tree ,
OG_05_0004062 (LandPlants) Phylogenetic Tree(s): OG_05_0004062_tree ,
OG_06_0065964 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g43540.1
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00097510 evm_27.TU.AmTr_v1... Protein degradation.26S proteasome.20S core... 0.02 Archaeplastida
AT3G51260 PAD1 20S proteasome alpha subunit PAD1 0.03 Archaeplastida
Cre01.g030850 No alias Protein degradation.26S proteasome.20S core... 0.03 Archaeplastida
Gb_06267 No alias component alpha type-4 of 26S proteasome 0.03 Archaeplastida
MA_10436167g0010 No alias component alpha type-4 of 26S proteasome 0.02 Archaeplastida
Mp6g07820.1 No alias component alpha type-4 of 26S proteasome 0.05 Archaeplastida
Pp3c18_9650V3.1 No alias proteasome alpha subunit D2 0.03 Archaeplastida
Pp3c19_7610V3.1 No alias proteasome alpha subunit D2 0.02 Archaeplastida
Pp3c21_8390V3.1 No alias proteasome alpha subunit D2 0.02 Archaeplastida
Pp3c22_8870V3.1 No alias proteasome alpha subunit D2 0.02 Archaeplastida
Solyc01g111450.3.1 No alias component alpha type-4 of 26S proteasome 0.05 Archaeplastida
Zm00001e010250_P002 No alias component alpha type-4 of 26S proteasome 0.08 Archaeplastida
Zm00001e024689_P001 No alias component alpha type-4 of 26S proteasome 0.09 Archaeplastida
Zm00001e035996_P001 No alias component alpha type-4 of 26S proteasome 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEA Interproscan
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
CC GO:0019773 proteasome core complex, alpha-subunit complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006897 endocytosis IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
MF GO:0019211 phosphatase activator activity IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
CC GO:0072546 ER membrane protein complex IEP Neighborhood
BP GO:0098657 import into cell IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 97 280
IPR000426 Proteasome_asu_N 74 96
No external refs found!