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  5. AMTR_s00009p00264580

AMTR_s00009p00264580 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.374

Description : Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000235 (Archaeplastida) Phylogenetic Tree(s): OG0000235_tree ,
OG_05_0000298 (LandPlants) Phylogenetic Tree(s): OG_05_0000298_tree ,
OG_06_0003159 (SeedPlants) Phylogenetic Tree(s): OG_06_0003159_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00264580
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
LOC_Os10g35760.2 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 Archaeplastida
Solyc01g100580.3.1 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.02 Archaeplastida
Solyc02g078350.3.1 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.03 Archaeplastida
Solyc06g071900.3.1 No alias Pentatricopeptide repeat-containing protein At1g07590,... 0.03 Archaeplastida
Zm00001e026211_P002 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.02 Archaeplastida
Zm00001e036620_P001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000966 RNA 5'-end processing IEP Neighborhood
BP GO:0001682 tRNA 5'-leader removal IEP Neighborhood
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004526 ribonuclease P activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004549 tRNA-specific ribonuclease activity IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0008219 cell death IEP Neighborhood
MF GO:0016229 steroid dehydrogenase activity IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0034471 ncRNA 5'-end processing IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
BP GO:0099116 tRNA 5'-end processing IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 77 122
IPR002885 Pentatricopeptide_repeat 225 249
IPR002885 Pentatricopeptide_repeat 149 173
IPR002885 Pentatricopeptide_repeat 264 281
IPR002885 Pentatricopeptide_repeat 44 73
No external refs found!