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  5. AMTR_s00009p00266410

AMTR_s00009p00266410 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.394

Description : Cell wall.cell wall proteins.expansins.beta-type expansin


Gene families : OG0000383 (Archaeplastida) Phylogenetic Tree(s): OG0000383_tree ,
OG_05_0000369 (LandPlants) Phylogenetic Tree(s): OG_05_0000369_tree ,
OG_06_0005944 (SeedPlants) Phylogenetic Tree(s): OG_06_0005944_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00266410
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AT2G20750 EXPB1, ATEXPB1,... expansin B1 0.03 Archaeplastida
AT2G45110 ATHEXP BETA 1.1,... expansin B4 0.03 Archaeplastida
Gb_14361 No alias beta-class expansin 0.03 Archaeplastida
Gb_19114 No alias beta-like-class expansin 0.05 Archaeplastida
LOC_Os02g42650.1 No alias beta-class expansin 0.04 Archaeplastida
LOC_Os03g01270.1 No alias Expansin-B7 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os04g44780.1 No alias Expansin-B17 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os04g46650.1 No alias Expansin-B5 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
LOC_Os10g40090.1 No alias Expansin-B9 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
LOC_Os10g40720.1 No alias Expansin-B3 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
LOC_Os10g40730.1 No alias Expansin-B4 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_10313796g0010 No alias Expansin-B16 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_166764g0010 No alias Expansin-B17 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
MA_78155g0010 No alias Expansin-B17 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Pp3c1_37980V3.1 No alias expansin B3 0.02 Archaeplastida
Solyc10g008440.3.1 No alias beta-class expansin 0.05 Archaeplastida
Zm00001e000036_P001 No alias Expansin-B4 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e000038_P001 No alias Expansin-B7 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e002335_P001 No alias Expansin-B3 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e002337_P001 No alias Expansin-B3 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Zm00001e002338_P001 No alias Expansin-B2 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e015336_P002 No alias Expansin-B11 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Zm00001e015337_P001 No alias Expansin-B11 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e023169_P003 No alias Putative expansin-B14 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e033407_P001 No alias Expansin-B11 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e036860_P001 No alias Putative expansin-B14 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e036907_P001 No alias Putative expansin-B14 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e037879_P001 No alias Expansin-B3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e037881_P001 No alias Expansin-B2 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Zm00001e037884_P001 No alias Expansin-B6 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Zm00001e037885_P001 No alias Expansin-B6 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Zm00001e041519_P002 No alias Expansin-B5 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 30 108
IPR007117 Expansin_CBD 122 203
No external refs found!