- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : transcription factor (bHLH)
Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0000040 (LandPlants) Phylogenetic Tree(s): OG_05_0000040_tree ,
OG_06_0000031 (SeedPlants) Phylogenetic Tree(s): OG_06_0000031_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os09g28210.1 | |
| Cluster | HCCA: Cluster_53 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G09530 | PIF3, POC1, PAP3 | phytochrome interacting factor 3 | 0.03 | Archaeplastida | |
| AT1G27740 | RSL4 | root hair defective 6-like 4 | 0.04 | Archaeplastida | |
| AT2G14760 | No alias | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.03 | Archaeplastida | |
| AT3G21330 | No alias | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.03 | Archaeplastida | |
| AT3G50330 | HEC2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.04 | Archaeplastida | |
| AT4G33880 | RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | 0.02 | Archaeplastida | |
| AT4G36930 | SPT | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.01 | Archaeplastida | |
| AT5G09750 | HEC3 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.03 | Archaeplastida | |
| AT5G67060 | HEC1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.03 | Archaeplastida | |
| GSVIVT01028238001 | No alias | RNA biosynthesis.transcriptional activation.bHLH... | 0.06 | Archaeplastida | |
| GSVIVT01028516001 | No alias | External stimuli response.light.red/far red light.PIF... | 0.02 | Archaeplastida | |
| GSVIVT01031338001 | No alias | External stimuli response.light.red/far red light.PIF... | 0.03 | Archaeplastida | |
| Gb_30387 | No alias | transcription factor (bHLH) | 0.04 | Archaeplastida | |
| Gb_30839 | No alias | transcription factor (bHLH) | 0.02 | Archaeplastida | |
| LOC_Os03g10770.1 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
| LOC_Os05g04740.2 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
| LOC_Os07g39940.1 | No alias | transcription factor (bHLH) | 0.04 | Archaeplastida | |
| LOC_Os12g39850.1 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
| MA_306658g0010 | No alias | transcription factor (bHLH) | 0.02 | Archaeplastida | |
| MA_83500g0010 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
| Mp6g21470.1 | No alias | transcription factor (bHLH) | 0.02 | Archaeplastida | |
| Pp3c10_19020V3.1 | No alias | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.03 | Archaeplastida | |
| Pp3c16_21590V3.1 | No alias | ROOT HAIR DEFECTIVE 6-LIKE 2 | 0.02 | Archaeplastida | |
| Pp3c1_40040V3.1 | No alias | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.02 | Archaeplastida | |
| Pp3c25_13740V3.1 | No alias | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.02 | Archaeplastida | |
| Pp3c27_8050V3.1 | No alias | ROOT HAIR DEFECTIVE 6-LIKE 2 | 0.02 | Archaeplastida | |
| Pp3c4_24380V3.1 | No alias | ROOT HAIR DEFECTIVE 6-LIKE 2 | 0.02 | Archaeplastida | |
| Pp3c4_4040V3.1 | No alias | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.02 | Archaeplastida | |
| Smo404767 | No alias | RNA biosynthesis.transcriptional activation.bHLH... | 0.02 | Archaeplastida | |
| Smo409950 | No alias | RNA biosynthesis.transcriptional activation.bHLH... | 0.03 | Archaeplastida | |
| Smo413232 | No alias | RNA biosynthesis.transcriptional activation.bHLH... | 0.03 | Archaeplastida | |
| Solyc01g102300.3.1 | No alias | transcription factor (bHLH). PIF red/far-red light... | 0.02 | Archaeplastida | |
| Solyc01g107140.3.1 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
| Solyc03g044460.1.1 | No alias | transcription factor (bHLH) | 0.04 | Archaeplastida | |
| Solyc04g077960.1.1 | No alias | transcription factor (bHLH) | 0.06 | Archaeplastida | |
| Solyc06g069600.3.1 | No alias | transcription factor (bHLH) | 0.02 | Archaeplastida | |
| Solyc07g043580.4.1 | No alias | transcription factor (bHLH). PIF red/far-red light... | 0.02 | Archaeplastida | |
| Solyc09g005070.1.1 | No alias | transcription factor (bHLH) | 0.02 | Archaeplastida | |
| Solyc12g088380.1.1 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
| Zm00001e006917_P001 | No alias | transcription factor (bHLH) | 0.02 | Archaeplastida | |
| Zm00001e015610_P001 | No alias | transcription factor (bHLH) | 0.05 | Archaeplastida | |
| Zm00001e018003_P001 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
| Zm00001e019392_P001 | No alias | transcription factor (bHLH) | 0.02 | Archaeplastida | |
| Zm00001e021883_P001 | No alias | transcription factor (bHLH) | 0.04 | Archaeplastida | |
| Zm00001e025656_P001 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
| Zm00001e029147_P001 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
| Zm00001e034339_P001 | No alias | transcription factor (bHLH) | 0.04 | Archaeplastida | |
| Zm00001e035422_P001 | No alias | transcription factor (bHLH) | 0.02 | Archaeplastida | |
| Zm00001e041668_P001 | No alias | transcription factor (bHLH) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0046983 | protein dimerization activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Neighborhood |
| MF | GO:0003824 | catalytic activity | IEP | Neighborhood |
| MF | GO:0003883 | CTP synthase activity | IEP | Neighborhood |
| MF | GO:0003993 | acid phosphatase activity | IEP | Neighborhood |
| MF | GO:0004601 | peroxidase activity | IEP | Neighborhood |
| MF | GO:0004672 | protein kinase activity | IEP | Neighborhood |
| MF | GO:0004834 | tryptophan synthase activity | IEP | Neighborhood |
| MF | GO:0005215 | transporter activity | IEP | Neighborhood |
| MF | GO:0005337 | nucleoside transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Neighborhood |
| BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Neighborhood |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006464 | cellular protein modification process | IEP | Neighborhood |
| BP | GO:0006468 | protein phosphorylation | IEP | Neighborhood |
| BP | GO:0006568 | tryptophan metabolic process | IEP | Neighborhood |
| BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Neighborhood |
| BP | GO:0006586 | indolalkylamine metabolic process | IEP | Neighborhood |
| BP | GO:0006793 | phosphorus metabolic process | IEP | Neighborhood |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0006810 | transport | IEP | Neighborhood |
| BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER | IEP | Neighborhood |
| BP | GO:0006950 | response to stress | IEP | Neighborhood |
| BP | GO:0006979 | response to oxidative stress | IEP | Neighborhood |
| BP | GO:0008037 | cell recognition | IEP | Neighborhood |
| BP | GO:0008150 | biological_process | IEP | Neighborhood |
| BP | GO:0008152 | metabolic process | IEP | Neighborhood |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Neighborhood |
| BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0015858 | nucleoside transport | IEP | Neighborhood |
| BP | GO:0015931 | nucleobase-containing compound transport | IEP | Neighborhood |
| MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0016209 | antioxidant activity | IEP | Neighborhood |
| MF | GO:0016301 | kinase activity | IEP | Neighborhood |
| BP | GO:0016310 | phosphorylation | IEP | Neighborhood |
| MF | GO:0016491 | oxidoreductase activity | IEP | Neighborhood |
| MF | GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | IEP | Neighborhood |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Neighborhood |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Neighborhood |
| MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
| MF | GO:0016836 | hydro-lyase activity | IEP | Neighborhood |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
| BP | GO:0022414 | reproductive process | IEP | Neighborhood |
| MF | GO:0022857 | transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0036211 | protein modification process | IEP | Neighborhood |
| BP | GO:0042430 | indole-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0043412 | macromolecule modification | IEP | Neighborhood |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | Neighborhood |
| BP | GO:0044106 | cellular amine metabolic process | IEP | Neighborhood |
| BP | GO:0048544 | recognition of pollen | IEP | Neighborhood |
| BP | GO:0050789 | regulation of biological process | IEP | Neighborhood |
| BP | GO:0050794 | regulation of cellular process | IEP | Neighborhood |
| BP | GO:0050896 | response to stimulus | IEP | Neighborhood |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051179 | localization | IEP | Neighborhood |
| BP | GO:0051234 | establishment of localization | IEP | Neighborhood |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0055085 | transmembrane transport | IEP | Neighborhood |
| BP | GO:0055114 | oxidation-reduction process | IEP | Neighborhood |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0065007 | biological regulation | IEP | Neighborhood |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Neighborhood |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Neighborhood |
| MF | GO:0140110 | transcription regulator activity | IEP | Neighborhood |
| BP | GO:1901264 | carbohydrate derivative transport | IEP | Neighborhood |
| MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:1901642 | nucleoside transmembrane transport | IEP | Neighborhood |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR011598 | bHLH_dom | 157 | 196 |
| No external refs found! |