LOC_Os09g28940.1

Description : deubiquitinase (UBP15-21)

Gene families : OG0000242 (Archaeplastida) Phylogenetic Tree(s): OG0000242_tree ,
OG_05_0000881 (LandPlants) Phylogenetic Tree(s): OG_05_0000881_tree ,
OG_06_0001276 (SeedPlants) Phylogenetic Tree(s): OG_06_0001276_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os09g28940.1
Cluster	HCCA: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00096p00170210	evm_27.TU.AmTr_v1...	Protein degradation.peptidase families.cysteine-type...	0.02	Archaeplastida
AT1G17110	UBP15	ubiquitin-specific protease 15	0.02	Archaeplastida
AT5G46740	UBP21	ubiquitin-specific protease 21	0.08	Archaeplastida
GSVIVT01000696001	No alias	Protein degradation.peptidase families.cysteine-type...	0.03	Archaeplastida
GSVIVT01009158001	No alias	Protein degradation.peptidase families.cysteine-type...	0.03	Archaeplastida
GSVIVT01013154001	No alias	Protein degradation.peptidase families.cysteine-type...	0.04	Archaeplastida
GSVIVT01033166001	No alias	Protein degradation.peptidase families.cysteine-type...	0.02	Archaeplastida
Gb_28125	No alias	deubiquitinase (UBP25)	0.03	Archaeplastida
LOC_Os02g14730.1	No alias	deubiquitinase (UBP15-21)	0.03	Archaeplastida
MA_10429414g0020	No alias	deubiquitinase (UBP15-21)	0.02	Archaeplastida
MA_127745g0010	No alias	Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis...	0.06	Archaeplastida
MA_132593g0020	No alias	Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis...	0.04	Archaeplastida
MA_53569g0010	No alias	deubiquitinase (UBP23)	0.04	Archaeplastida
Mp1g03220.1	No alias	Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis...	0.03	Archaeplastida
Pp3c5_25690V3.1	No alias	ubiquitin-specific protease 18	0.06	Archaeplastida
Pp3c6_5860V3.1	No alias	ubiquitin-specific protease 18	0.04	Archaeplastida
Solyc02g005000.1.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc02g005600.1.1	No alias	Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabidopsis...	0.03	Archaeplastida
Solyc04g076210.3.1	No alias	deubiquitinase (UBP15-21)	0.04	Archaeplastida
Solyc07g061780.4.1	No alias	deubiquitinase (UBP15-21)	0.05	Archaeplastida
Zm00001e022516_P001	No alias	deubiquitinase (UBP15-21)	0.03	Archaeplastida
Zm00001e023273_P001	No alias	Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e024878_P003	No alias	deubiquitinase (UBP15-21)	0.04	Archaeplastida
Zm00001e030428_P001	No alias	deubiquitinase (UBP15-21)	0.03	Archaeplastida
Zm00001e036315_P001	No alias	deubiquitinase (UBP23)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein-specific protease activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	ubiquitinyl hydrolase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Neighborhood
MF	GO:0005096	GTPase activator activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006270	DNA replication initiation	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
MF	GO:0008047	enzyme activator activity	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016311	dephosphorylation	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0018193	peptidyl-amino acid modification	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0030695	GTPase regulator activity	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0036260	RNA capping	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Neighborhood
MF	GO:0070568	guanylyltransferase activity	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001394	Peptidase_C19_UCH	379	694

External Links

No external refs found!

LOC_Os09g28940.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation