LOC_Os10g23100.1

Description : A-class RAB GTPase

Gene families : OG0000173 (Archaeplastida) Phylogenetic Tree(s): OG0000173_tree ,
OG_05_0001287 (LandPlants) Phylogenetic Tree(s): OG_05_0001287_tree ,
OG_06_0001319 (SeedPlants) Phylogenetic Tree(s): OG_06_0001319_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os10g23100.1
Cluster	HCCA: Cluster_307

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00189630	evm_27.TU.AmTr_v1...	Vesicle trafficking.regulation of membrane tethering and...	0.04	Archaeplastida
AMTR_s00108p00135260	evm_27.TU.AmTr_v1...	Vesicle trafficking.regulation of membrane tethering and...	0.02	Archaeplastida
AT1G09630	ATRABA2A,...	RAB GTPase 11C	0.1	Archaeplastida
AT1G16920	ATRABA1B, RAB11, RABA1b	RAB GTPase homolog A1B	0.04	Archaeplastida
AT4G39990	ATRABA4B, ATGB3,...	RAB GTPase homolog A4B	0.03	Archaeplastida
AT5G65270	AtRABA4a, RABA4a	RAB GTPase homolog A4A	0.05	Archaeplastida
Cpa\|evm.model.tig00020961.97	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.01	Archaeplastida
Cre03.g189250	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.1	Archaeplastida
GSVIVT01020651001	No alias	Ras-related protein RABA1e OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01021253001	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.05	Archaeplastida
GSVIVT01023225001	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.04	Archaeplastida
Gb_12544	No alias	A-class RAB GTPase	0.02	Archaeplastida
Gb_18286	No alias	A-class RAB GTPase	0.03	Archaeplastida
Gb_37703	No alias	A-class RAB GTPase	0.04	Archaeplastida
LOC_Os03g60870.1	No alias	A-class RAB GTPase	0.03	Archaeplastida
MA_10428137g0010	No alias	A-class RAB GTPase	0.02	Archaeplastida
MA_109703g0010	No alias	A-class RAB GTPase	0.04	Archaeplastida
MA_93200g0020	No alias	Ras-related protein RABA4d OS=Arabidopsis thaliana...	0.02	Archaeplastida
Pp3c14_15250V3.1	No alias	RAB GTPase homolog A2B	0.05	Archaeplastida
Pp3c14_15310V3.1	No alias	RAB GTPase homolog A2B	0.04	Archaeplastida
Pp3c2_10280V3.1	No alias	RAB GTPase homolog A2B	0.05	Archaeplastida
Smo146310	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.02	Archaeplastida
Solyc10g045550.2.1	No alias	A-class RAB GTPase	0.09	Archaeplastida
Zm00001e006210_P001	No alias	A-class RAB GTPase	0.03	Archaeplastida
Zm00001e027669_P001	No alias	A-class RAB GTPase	0.03	Archaeplastida
Zm00001e028750_P001	No alias	A-class RAB GTPase	0.03	Archaeplastida
Zm00001e030680_P001	No alias	A-class RAB GTPase	0.06	Archaeplastida
Zm00001e031368_P002	No alias	A-class RAB GTPase	0.03	Archaeplastida
Zm00001e038828_P001	No alias	A-class RAB GTPase	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005739	mitochondrion	IEP	Neighborhood
CC	GO:0005783	endoplasmic reticulum	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
CC	GO:0005875	microtubule associated complex	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	IEP	Neighborhood
BP	GO:0007010	cytoskeleton organization	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Neighborhood
CC	GO:0030117	membrane coat	IEP	Neighborhood
CC	GO:0030118	clathrin coat	IEP	Neighborhood
CC	GO:0030120	vesicle coat	IEP	Neighborhood
CC	GO:0030125	clathrin vesicle coat	IEP	Neighborhood
CC	GO:0030126	COPI vesicle coat	IEP	Neighborhood
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Neighborhood
CC	GO:0030132	clathrin coat of coated pit	IEP	Neighborhood
CC	GO:0030286	dynein complex	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044430	cytoskeletal part	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	12	172

External Links

No external refs found!

LOC_Os10g23100.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation