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  5. LOC_Os10g29310.1

LOC_Os10g29310.1


Description : BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana (sp|q8l765|bpm1_arath : 271.0)


Gene families : OG0000128 (Archaeplastida) Phylogenetic Tree(s): OG0000128_tree ,
OG_05_0003305 (LandPlants) Phylogenetic Tree(s): OG_05_0003305_tree ,
OG_06_0003636 (SeedPlants) Phylogenetic Tree(s): OG_06_0003636_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g29310.1
Cluster HCCA: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
Zm00001e003615_P002 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e005040_P001 No alias BTB/POZ and MATH domain-containing protein 2... 0.03 Archaeplastida
Zm00001e006483_P001 No alias BTB/POZ and MATH domain-containing protein 1... 0.03 Archaeplastida
Zm00001e030370_P001 No alias BTB/POZ and MATH domain-containing protein 2... 0.02 Archaeplastida
Zm00001e033378_P002 No alias BTB/POZ and MATH domain-containing protein 2... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Neighborhood
CC GO:0000445 THO complex part of transcription export complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
InterPro domains Description Start Stop
IPR000210 BTB/POZ_dom 185 294
IPR002083 MATH/TRAF_dom 43 151
No external refs found!