- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial OS=Arabidopsis thaliana (sp|q9ljr6|pp253_arath : 486.0)
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os10g39460.2 | |
| Cluster | HCCA: Cluster_65 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00001p00138570 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.02 | Archaeplastida | |
| AMTR_s00057p00172690 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g37170... | 0.03 | Archaeplastida | |
| AMTR_s00127p00016340 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g32430,... | 0.02 | Archaeplastida | |
| Cre08.g358250 | No alias | Pentatricopeptide repeat-containing protein At5g02860... | 0.02 | Archaeplastida | |
| GSVIVT01031251001 | No alias | Pentatricopeptide repeat-containing protein At5g48910... | 0.03 | Archaeplastida | |
| Gb_40976 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| Gb_40986 | No alias | Pentatricopeptide repeat-containing protein At4g30700... | 0.04 | Archaeplastida | |
| Smo123655 | No alias | Pentatricopeptide repeat-containing protein At5g48910... | 0.02 | Archaeplastida | |
| Smo411 | No alias | Pentatricopeptide repeat-containing protein At4g19220,... | 0.03 | Archaeplastida | |
| Smo72231 | No alias | Pentatricopeptide repeat-containing protein At4g20770... | 0.04 | Archaeplastida | |
| Smo77340 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | Archaeplastida | |
| Solyc12g096680.1.1 | No alias | Pentatricopeptide repeat-containing protein At2g03880,... | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004175 | endopeptidase activity | IEP | Neighborhood |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Neighborhood |
| MF | GO:0005507 | copper ion binding | IEP | Neighborhood |
| MF | GO:0008131 | primary amine oxidase activity | IEP | Neighborhood |
| MF | GO:0008237 | metallopeptidase activity | IEP | Neighborhood |
| BP | GO:0009308 | amine metabolic process | IEP | Neighborhood |
| MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Neighborhood |
| MF | GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | IEP | Neighborhood |
| CC | GO:0031012 | extracellular matrix | IEP | Neighborhood |
| CC | GO:0044421 | extracellular region part | IEP | Neighborhood |
| MF | GO:0046983 | protein dimerization activity | IEP | Neighborhood |
| MF | GO:0048038 | quinone binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 245 | 273 |
| IPR002885 | Pentatricopeptide_repeat | 145 | 172 |
| IPR002885 | Pentatricopeptide_repeat | 76 | 98 |
| IPR002885 | Pentatricopeptide_repeat | 449 | 474 |
| IPR002885 | Pentatricopeptide_repeat | 175 | 205 |
| IPR002885 | Pentatricopeptide_repeat | 274 | 310 |
| IPR002885 | Pentatricopeptide_repeat | 374 | 421 |
| IPR032867 | DYW_dom | 547 | 671 |
| No external refs found! |