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  5. LOC_Os10g39880.1

LOC_Os10g39880.1


Description : Photosystem II protein D1 OS=Oryza sativa subsp. indica (sp|p0c433|psba_orysi : 370.0)


Gene families : OG0001158 (Archaeplastida) Phylogenetic Tree(s): OG0001158_tree ,
OG_05_0000799 (LandPlants) Phylogenetic Tree(s): OG_05_0000799_tree ,
OG_06_0000883 (SeedPlants) Phylogenetic Tree(s): OG_06_0000883_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g39880.1
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00270980 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.03 Archaeplastida
AMTR_s00071p00011330 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.03 Archaeplastida
AMTR_s00172p00027480 No alias Photosystem II protein D1 OS=Amborella trichopoda 0.03 Archaeplastida
AMTR_s00172p00030370 No alias Photosystem II protein D1 OS=Amborella trichopoda 0.03 Archaeplastida
AMTR_s00172p00038240 No alias Photosystem II protein D1 OS=Amborella trichopoda 0.03 Archaeplastida
AMTR_s00172p00040120 No alias Photosystem II protein D1 OS=Amborella trichopoda 0.03 Archaeplastida
AMTR_s00390p00002060 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.03 Archaeplastida
ATCG00020 PSBA photosystem II reaction center protein A 0.07 Archaeplastida
GSVIVT01016441001 No alias Photosystem II protein D1 OS=Vitis vinifera 0.01 Archaeplastida
Gb_03955 No alias Photosystem II protein D1 OS=Cryptomeria japonica... 0.01 Archaeplastida
Gb_09035 No alias Photosystem II protein D1 OS=Cryptomeria japonica... 0.01 Archaeplastida
Gb_18604 No alias Photosystem II protein D1 OS=Adiantum capillus-veneris... 0.01 Archaeplastida
Gb_23102 No alias no description available(sp|q85bh5|psba_antag : 432.0) 0.02 Archaeplastida
Gb_26289 No alias no description available(sp|q85bh5|psba_antag : 489.0) 0.22 Archaeplastida
LOC_Os10g21192.1 No alias component PsbA/D1 of PS-II reaction center complex 0.09 Archaeplastida
LOC_Os12g19580.1 No alias Photosystem II protein D1 OS=Oryza sativa subsp. indica... 0.08 Archaeplastida
Mp1g09910.1 No alias Photosystem II protein D1 OS=Chlorella ellipsoidea... 0.06 Archaeplastida
Mp3g12650.1 No alias Photosystem II protein D1 OS=Marchantia polymorpha... 0.06 Archaeplastida
Mp5g10950.1 No alias No annotation 0.04 Archaeplastida
Smo139195 No alias Photosystem II protein D1 OS=Phalaenopsis aphrodite... 0.06 Archaeplastida
Smo236852 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.07 Archaeplastida
Solyc00g500130.1.1 No alias component PsbA/D1 of PS-II reaction center complex 0.11 Archaeplastida
Solyc00g500200.1.1 No alias component PsbA/D1 of PS-II reaction center complex 0.11 Archaeplastida
Solyc00g500296.1.1 No alias component PsbA/D1 of PS-II reaction center complex 0.11 Archaeplastida
Solyc00g500329.1.1 No alias component PsbA/D1 of PS-II reaction center complex 0.11 Archaeplastida
Solyc01g097530.3.1 No alias Photosystem II protein D1 OS=Cuscuta obtusiflora... 0.09 Archaeplastida
Solyc02g021290.1.1 No alias Photosystem II protein D1 OS=Chlorella ellipsoidea... 0.03 Archaeplastida
Solyc05g016120.2.1 No alias no hits & (original description: none) 0.12 Archaeplastida
Solyc12g039030.1.1 No alias Photosystem II protein D1 OS=Oltmannsiellopsis viridis... 0.04 Archaeplastida
Zm00001e036844_P001 No alias Photosystem II protein D1 OS=Zea mays... 0.02 Archaeplastida
Zm00001e042113_P001 No alias Photosystem II protein D1 OS=Zea mays... 0.04 Archaeplastida
Zm00001e042176_P001 No alias component PsbA/D1 of PS-II reaction center complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0009772 photosynthetic electron transport in photosystem II IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0031647 regulation of protein stability IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0042301 phosphate ion binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0050821 protein stabilization IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000484 Photo_RC_L/M 27 171
IPR000484 Photo_RC_L/M 170 215
No external refs found!