Coexpression cluster: Cluster_125 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034641 cellular nitrogen compound metabolic process 35.58% (58/163) 3.72 0.0 0.0
GO:0044424 intracellular part 42.33% (69/163) 3.9 0.0 0.0
GO:0009987 cellular process 55.83% (91/163) 2.53 0.0 0.0
GO:1901576 organic substance biosynthetic process 33.13% (54/163) 3.93 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 33.13% (54/163) 4.56 0.0 0.0
GO:0044237 cellular metabolic process 55.21% (90/163) 2.71 0.0 0.0
GO:0032991 protein-containing complex 37.42% (61/163) 4.26 0.0 0.0
GO:0044249 cellular biosynthetic process 33.13% (54/163) 4.01 0.0 0.0
GO:0009058 biosynthetic process 33.74% (55/163) 3.81 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 30.06% (49/163) 4.61 0.0 0.0
GO:0044464 cell part 42.33% (69/163) 3.85 0.0 0.0
GO:0006412 translation 23.31% (38/163) 5.06 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 26.38% (43/163) 4.58 0.0 0.0
GO:0005575 cellular_component 47.24% (77/163) 2.85 0.0 0.0
GO:0003735 structural constituent of ribosome 23.31% (38/163) 5.05 0.0 0.0
GO:0043043 peptide biosynthetic process 23.31% (38/163) 5.03 0.0 0.0
GO:0008152 metabolic process 63.19% (103/163) 2.14 0.0 0.0
GO:0006518 peptide metabolic process 23.31% (38/163) 4.99 0.0 0.0
GO:0043604 amide biosynthetic process 23.31% (38/163) 4.98 0.0 0.0
GO:0005198 structural molecule activity 23.31% (38/163) 4.96 0.0 0.0
GO:0043603 cellular amide metabolic process 23.31% (38/163) 4.92 0.0 0.0
GO:0009059 macromolecule biosynthetic process 26.38% (43/163) 4.46 0.0 0.0
GO:0005840 ribosome 22.09% (36/163) 5.05 0.0 0.0
GO:0043228 non-membrane-bounded organelle 22.09% (36/163) 4.9 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 22.09% (36/163) 4.9 0.0 0.0
GO:1990904 ribonucleoprotein complex 22.09% (36/163) 4.89 0.0 0.0
GO:0015979 photosynthesis 13.5% (22/163) 6.31 0.0 0.0
GO:0008150 biological_process 65.03% (106/163) 1.66 0.0 0.0
GO:0044436 thylakoid part 12.88% (21/163) 6.26 0.0 0.0
GO:0044444 cytoplasmic part 22.09% (36/163) 4.08 0.0 0.0
GO:0043229 intracellular organelle 22.09% (36/163) 4.01 0.0 0.0
GO:0043226 organelle 22.09% (36/163) 4.01 0.0 0.0
GO:0098796 membrane protein complex 15.34% (25/163) 5.19 0.0 0.0
GO:0009521 photosystem 11.04% (18/163) 6.19 0.0 0.0
GO:0044425 membrane part 22.09% (36/163) 3.48 0.0 0.0
GO:1902600 proton transmembrane transport 9.82% (16/163) 5.85 0.0 0.0
GO:0015672 monovalent inorganic cation transport 9.82% (16/163) 5.36 0.0 0.0
GO:0019684 photosynthesis, light reaction 6.13% (10/163) 7.34 0.0 0.0
GO:0098655 cation transmembrane transport 9.82% (16/163) 5.23 0.0 0.0
GO:0098660 inorganic ion transmembrane transport 9.82% (16/163) 5.23 0.0 0.0
GO:0098662 inorganic cation transmembrane transport 9.82% (16/163) 5.23 0.0 0.0
GO:0006807 nitrogen compound metabolic process 35.58% (58/163) 1.99 0.0 0.0
GO:0009579 thylakoid 5.52% (9/163) 7.73 0.0 0.0
GO:0009767 photosynthetic electron transport chain 6.13% (10/163) 7.25 0.0 0.0
GO:0034220 ion transmembrane transport 9.82% (16/163) 5.1 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 31.9% (52/163) 2.07 0.0 0.0
GO:0046034 ATP metabolic process 8.59% (14/163) 5.4 0.0 0.0
GO:0015986 ATP synthesis coupled proton transport 6.75% (11/163) 6.43 0.0 0.0
GO:0015985 energy coupled proton transport, down electrochemical gradient 6.75% (11/163) 6.43 0.0 0.0
GO:0009205 purine ribonucleoside triphosphate metabolic process 8.59% (14/163) 5.38 0.0 0.0
GO:0009144 purine nucleoside triphosphate metabolic process 8.59% (14/163) 5.38 0.0 0.0
GO:0009199 ribonucleoside triphosphate metabolic process 8.59% (14/163) 5.38 0.0 0.0
GO:0009123 nucleoside monophosphate metabolic process 8.59% (14/163) 5.35 0.0 0.0
GO:0009126 purine nucleoside monophosphate metabolic process 8.59% (14/163) 5.35 0.0 0.0
GO:0009161 ribonucleoside monophosphate metabolic process 8.59% (14/163) 5.35 0.0 0.0
GO:0009167 purine ribonucleoside monophosphate metabolic process 8.59% (14/163) 5.35 0.0 0.0
GO:0009141 nucleoside triphosphate metabolic process 8.59% (14/163) 5.33 0.0 0.0
GO:0071704 organic substance metabolic process 37.42% (61/163) 1.78 0.0 0.0
GO:0022900 electron transport chain 6.13% (10/163) 6.75 0.0 0.0
GO:0009259 ribonucleotide metabolic process 8.59% (14/163) 5.12 0.0 0.0
GO:0009150 purine ribonucleotide metabolic process 8.59% (14/163) 5.12 0.0 0.0
GO:0006163 purine nucleotide metabolic process 8.59% (14/163) 5.08 0.0 0.0
GO:0019693 ribose phosphate metabolic process 8.59% (14/163) 5.06 0.0 0.0
GO:0072521 purine-containing compound metabolic process 8.59% (14/163) 5.06 0.0 0.0
GO:0044238 primary metabolic process 35.58% (58/163) 1.75 0.0 0.0
GO:0034654 nucleobase-containing compound biosynthetic process 10.43% (17/163) 4.22 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 26.38% (43/163) 2.13 0.0 0.0
GO:0009117 nucleotide metabolic process 8.59% (14/163) 4.82 0.0 0.0
GO:0006753 nucleoside phosphate metabolic process 8.59% (14/163) 4.79 0.0 0.0
GO:0044267 cellular protein metabolic process 23.31% (38/163) 2.26 0.0 0.0
GO:0055086 nucleobase-containing small molecule metabolic process 8.59% (14/163) 4.58 0.0 0.0
GO:0017144 drug metabolic process 8.59% (14/163) 4.58 0.0 0.0
GO:0009523 photosystem II 6.13% (10/163) 5.85 0.0 0.0
GO:0018130 heterocycle biosynthetic process 10.43% (17/163) 3.94 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 10.43% (17/163) 3.93 0.0 0.0
GO:0006754 ATP biosynthetic process 6.75% (11/163) 5.23 0.0 0.0
GO:0009201 ribonucleoside triphosphate biosynthetic process 6.75% (11/163) 5.23 0.0 0.0
GO:0009142 nucleoside triphosphate biosynthetic process 6.75% (11/163) 5.23 0.0 0.0
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 6.75% (11/163) 5.23 0.0 0.0
GO:0009145 purine nucleoside triphosphate biosynthetic process 6.75% (11/163) 5.23 0.0 0.0
GO:1901135 carbohydrate derivative metabolic process 8.59% (14/163) 4.36 0.0 0.0
GO:1901362 organic cyclic compound biosynthetic process 10.43% (17/163) 3.78 0.0 0.0
GO:0003674 molecular_function 61.96% (101/163) 0.93 0.0 0.0
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 6.75% (11/163) 5.17 0.0 0.0
GO:0009156 ribonucleoside monophosphate biosynthetic process 6.75% (11/163) 5.17 0.0 0.0
GO:0009124 nucleoside monophosphate biosynthetic process 6.75% (11/163) 5.17 0.0 0.0
GO:0009127 purine nucleoside monophosphate biosynthetic process 6.75% (11/163) 5.17 0.0 0.0
GO:0006812 cation transport 9.82% (16/163) 3.89 0.0 0.0
GO:0046390 ribose phosphate biosynthetic process 6.75% (11/163) 5.12 0.0 0.0
GO:0009152 purine ribonucleotide biosynthetic process 6.75% (11/163) 5.12 0.0 0.0
GO:0009260 ribonucleotide biosynthetic process 6.75% (11/163) 5.12 0.0 0.0
GO:0006164 purine nucleotide biosynthetic process 6.75% (11/163) 5.07 0.0 0.0
GO:0072522 purine-containing compound biosynthetic process 6.75% (11/163) 5.03 0.0 0.0
GO:0016168 chlorophyll binding 3.68% (6/163) 7.6 0.0 0.0
GO:0019637 organophosphate metabolic process 8.59% (14/163) 4.14 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 6.13% (10/163) 5.29 0.0 0.0
GO:1901293 nucleoside phosphate biosynthetic process 6.75% (11/163) 4.79 0.0 0.0
GO:0009165 nucleotide biosynthetic process 6.75% (11/163) 4.79 0.0 0.0
GO:1901137 carbohydrate derivative biosynthetic process 6.75% (11/163) 4.77 0.0 0.0
GO:0006811 ion transport 9.82% (16/163) 3.51 0.0 0.0
GO:0043170 macromolecule metabolic process 26.99% (44/163) 1.7 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 12.88% (21/163) 2.84 0.0 0.0
GO:0019538 protein metabolic process 23.31% (38/163) 1.81 0.0 0.0
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 4.29% (7/163) 6.07 0.0 0.0
GO:0046483 heterocycle metabolic process 12.88% (21/163) 2.72 0.0 0.0
GO:0090407 organophosphate biosynthetic process 6.75% (11/163) 4.31 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 12.88% (21/163) 2.7 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 12.88% (21/163) 2.67 0.0 0.0
GO:0009055 electron transfer activity 6.75% (11/163) 4.22 0.0 0.0
GO:0016651 oxidoreductase activity, acting on NAD(P)H 4.29% (7/163) 5.87 0.0 0.0
GO:0016984 ribulose-bisphosphate carboxylase activity 2.45% (4/163) 8.02 0.0 0.0
GO:0050821 protein stabilization 2.45% (4/163) 8.02 0.0 0.0
GO:0042301 phosphate ion binding 2.45% (4/163) 8.02 0.0 0.0
GO:0031647 regulation of protein stability 2.45% (4/163) 8.02 0.0 0.0
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 3.07% (5/163) 6.43 0.0 0.0
GO:0044281 small molecule metabolic process 8.59% (14/163) 3.0 0.0 0.0
GO:0016021 integral component of membrane 9.82% (16/163) 2.67 0.0 0.0
GO:0031224 intrinsic component of membrane 9.82% (16/163) 2.64 0.0 0.0
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 3.68% (6/163) 5.32 0.0 0.0
GO:0015078 proton transmembrane transporter activity 4.29% (7/163) 4.67 0.0 0.0
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 2.45% (4/163) 7.02 0.0 0.0
GO:0009772 photosynthetic electron transport in photosystem II 2.45% (4/163) 7.02 0.0 0.0
GO:0034062 5'-3' RNA polymerase activity 3.68% (6/163) 5.14 0.0 0.0
GO:0097747 RNA polymerase activity 3.68% (6/163) 5.14 0.0 0.0
GO:0055085 transmembrane transport 9.82% (16/163) 2.46 0.0 0.0
GO:0015977 carbon fixation 2.45% (4/163) 6.56 0.0 0.0
GO:0050136 NADH dehydrogenase (quinone) activity 2.45% (4/163) 6.43 0.0 0.0
GO:0003954 NADH dehydrogenase activity 2.45% (4/163) 6.43 0.0 0.0
GO:0008137 NADH dehydrogenase (ubiquinone) activity 2.45% (4/163) 6.43 0.0 0.0
GO:0015077 monovalent inorganic cation transmembrane transporter activity 4.29% (7/163) 4.21 0.0 0.0
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 2.45% (4/163) 6.02 0.0 1e-06
GO:0031361 integral component of thylakoid membrane 1.84% (3/163) 7.28 1e-06 1e-06
GO:0031360 intrinsic component of thylakoid membrane 1.84% (3/163) 7.28 1e-06 1e-06
GO:0055114 oxidation-reduction process 11.66% (19/163) 1.93 1e-06 1e-06
GO:0097659 nucleic acid-templated transcription 3.68% (6/163) 4.14 1e-06 2e-06
GO:0006351 transcription, DNA-templated 3.68% (6/163) 4.14 1e-06 2e-06
GO:0016020 membrane 9.2% (15/163) 2.17 2e-06 2e-06
GO:0022890 inorganic cation transmembrane transporter activity 4.29% (7/163) 3.51 3e-06 5e-06
GO:0009539 photosystem II reaction center 1.84% (3/163) 6.6 3e-06 5e-06
GO:0016779 nucleotidyltransferase activity 3.68% (6/163) 3.87 4e-06 6e-06
GO:0016491 oxidoreductase activity 11.04% (18/163) 1.75 8e-06 1.2e-05
GO:0008324 cation transmembrane transporter activity 4.29% (7/163) 3.26 1e-05 1.5e-05
GO:0032774 RNA biosynthetic process 3.68% (6/163) 3.6 1.1e-05 1.7e-05
GO:0048038 quinone binding 1.84% (3/163) 6.02 1.2e-05 1.8e-05
GO:0048037 cofactor binding 8.59% (14/163) 2.0 1.3e-05 1.9e-05
GO:0006810 transport 9.82% (16/163) 1.82 1.4e-05 2.1e-05
GO:0051234 establishment of localization 9.82% (16/163) 1.82 1.4e-05 2.1e-05
GO:0051179 localization 9.82% (16/163) 1.8 1.7e-05 2.5e-05
GO:0016831 carboxy-lyase activity 2.45% (4/163) 4.43 3.7e-05 5.4e-05
GO:0015318 inorganic molecular entity transmembrane transporter activity 4.29% (7/163) 2.95 3.8e-05 5.5e-05
GO:0046906 tetrapyrrole binding 6.13% (10/163) 2.22 6.4e-05 9.3e-05
GO:0019843 rRNA binding 1.84% (3/163) 5.14 8.3e-05 0.000118
GO:0015075 ion transmembrane transporter activity 4.29% (7/163) 2.77 8.4e-05 0.00012
GO:0016830 carbon-carbon lyase activity 2.45% (4/163) 4.02 0.000114 0.000161
GO:0000287 magnesium ion binding 2.45% (4/163) 3.52 0.000424 0.000596
GO:0016070 RNA metabolic process 4.29% (7/163) 2.23 0.000787 0.001099
GO:0009522 photosystem I 1.23% (2/163) 5.56 0.000798 0.001107
GO:0140098 catalytic activity, acting on RNA 3.68% (6/163) 2.46 0.000851 0.001175
GO:0051287 NAD binding 1.84% (3/163) 3.96 0.000971 0.001332
GO:0065008 regulation of biological quality 2.45% (4/163) 3.18 0.00103 0.001403
GO:0005488 binding 27.61% (45/163) 0.53 0.005531 0.007489
GO:0016829 lyase activity 2.45% (4/163) 2.45 0.006479 0.008719
GO:0043167 ion binding 15.95% (26/163) 0.73 0.007248 0.009694
GO:0006796 phosphate-containing compound metabolic process 8.59% (14/163) 1.06 0.007657 0.010116
GO:0006793 phosphorus metabolic process 8.59% (14/163) 1.06 0.007657 0.010116
GO:0090304 nucleic acid metabolic process 4.29% (7/163) 1.62 0.008295 0.010893
GO:0010109 regulation of photosynthesis 0.61% (1/163) 5.69 0.01917 0.024583
GO:0042548 regulation of photosynthesis, light reaction 0.61% (1/163) 5.69 0.01917 0.024583
GO:0042549 photosystem II stabilization 0.61% (1/163) 5.69 0.01917 0.024583
GO:0043467 regulation of generation of precursor metabolites and energy 0.61% (1/163) 5.69 0.01917 0.024583
GO:0022857 transmembrane transporter activity 4.29% (7/163) 1.36 0.020613 0.026279
GO:1901363 heterocyclic compound binding 17.18% (28/163) 0.57 0.02106 0.026538
GO:0097159 organic cyclic compound binding 17.18% (28/163) 0.57 0.02106 0.026538
GO:0005215 transporter activity 4.29% (7/163) 1.33 0.022788 0.02855
GO:0017004 cytochrome complex assembly 0.61% (1/163) 5.43 0.02296 0.028602
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_2 0.116 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_61 0.047 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_107 0.467 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_92 0.244 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_199 0.024 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_221 0.029 Archaeplastida Compare
Gingko biloba HCCA Cluster_30 0.066 Archaeplastida Compare
Gingko biloba HCCA Cluster_78 0.198 Archaeplastida Compare
Gingko biloba HCCA Cluster_89 0.083 Archaeplastida Compare
Gingko biloba HCCA Cluster_297 0.031 Archaeplastida Compare
Zea mays HCCA Cluster_44 0.036 Archaeplastida Compare
Zea mays HCCA Cluster_45 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_83 0.044 Archaeplastida Compare
Zea mays HCCA Cluster_93 0.041 Archaeplastida Compare
Zea mays HCCA Cluster_100 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_109 0.068 Archaeplastida Compare
Zea mays HCCA Cluster_160 0.232 Archaeplastida Compare
Zea mays HCCA Cluster_172 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_255 0.152 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_2 0.038 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_8 0.114 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_140 0.038 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_154 0.03 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_82 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_137 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_236 0.033 Archaeplastida Compare
Picea abies HCCA Cluster_54 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_132 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_4 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_182 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_233 0.101 Archaeplastida Compare
Oryza sativa HCCA Cluster_238 0.039 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_27 0.333 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_1 0.054 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_3 0.083 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_4 0.041 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_5 0.292 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_16 0.059 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_18 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_24 0.03 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_34 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_76 0.06 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_83 0.412 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_87 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_90 0.029 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_93 0.032 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_102 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_113 0.048 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_149 0.072 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_172 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_174 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_191 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_199 0.041 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_287 0.029 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_312 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_20 0.054 Archaeplastida Compare
Vitis vinifera HCCA Cluster_25 0.078 Archaeplastida Compare
Vitis vinifera HCCA Cluster_99 0.067 Archaeplastida Compare
Vitis vinifera HCCA Cluster_165 0.022 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_17 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_37 0.037 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_94 0.026 Archaeplastida Compare
Sequences (163) (download table)

InterPro Domains

GO Terms

Family Terms