1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os10g39980.1

LOC_Os10g39980.1


Description : putative silicon efflux transporter (LSI2)


Gene families : OG0001845 (Archaeplastida) Phylogenetic Tree(s): OG0001845_tree ,
OG_05_0001690 (LandPlants) Phylogenetic Tree(s): OG_05_0001690_tree ,
OG_06_0014048 (SeedPlants) Phylogenetic Tree(s): OG_06_0014048_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g39980.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00226220 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.IT... 0.08 Archaeplastida
GSVIVT01028896001 No alias Solute transport.carrier-mediated transport.IT... 0.02 Archaeplastida
GSVIVT01035710001 No alias Solute transport.carrier-mediated transport.IT... 0.06 Archaeplastida
LOC_Os03g01700.1 No alias putative silicon efflux transporter (LSI2) 0.07 Archaeplastida
Pp3c12_25560V3.1 No alias Divalent ion symporter 0.03 Archaeplastida
Pp3c12_25580V3.1 No alias Divalent ion symporter 0.02 Archaeplastida
Pp3c3_31700V3.1 No alias Divalent ion symporter 0.02 Archaeplastida
Smo148775 No alias Solute transport.carrier-mediated transport.IT... 0.03 Archaeplastida
Zm00001e000055_P001 No alias putative silicon efflux transporter (LSI2) 0.04 Archaeplastida
Zm00001e002282_P001 No alias putative silicon efflux transporter (LSI2) 0.04 Archaeplastida
Zm00001e023569_P001 No alias putative silicon efflux transporter (LSI2) 0.07 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004556 alpha-amylase activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004680 Cit_transptr-like_dom 29 428
No external refs found!