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  5. AMTR_s00010p00259590

AMTR_s00010p00259590 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.424

Description : DExH-box ATP-dependent RNA helicase DExH18, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0002220 (Archaeplastida) Phylogenetic Tree(s): OG0002220_tree ,
OG_05_0004290 (LandPlants) Phylogenetic Tree(s): OG_05_0004290_tree ,
OG_06_0004225 (SeedPlants) Phylogenetic Tree(s): OG_06_0004225_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00259590
Cluster HCCA: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
LOC_Os04g38630.1 No alias ATP-dependent RNA helicase SUV3L, mitochondrial OS=Oryza... 0.03 Archaeplastida
MA_10431670g0010 No alias DExH-box ATP-dependent RNA helicase DExH18,... 0.02 Archaeplastida
Zm00001e007912_P001 No alias ATP-dependent RNA helicase SUV3L, mitochondrial OS=Oryza... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 458 539
IPR022192 SUV3_C 685 733
No external refs found!