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  5. LOC_Os11g39360.2

LOC_Os11g39360.2


Description : Pentatricopeptide repeat-containing protein At4g19890 OS=Arabidopsis thaliana (sp|p0c8q3|pp326_arath : 613.0)


Gene families : OG0010095 (Archaeplastida) Phylogenetic Tree(s): OG0010095_tree ,
OG_05_0010129 (LandPlants) Phylogenetic Tree(s): OG_05_0010129_tree ,
OG_06_0008802 (SeedPlants) Phylogenetic Tree(s): OG_06_0008802_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g39360.2
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00149p00045220 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g19890... 0.02 Archaeplastida
Gb_23241 No alias Pentatricopeptide repeat-containing protein At4g19890... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 428 474
IPR002885 Pentatricopeptide_repeat 355 404
IPR002885 Pentatricopeptide_repeat 249 298
IPR002885 Pentatricopeptide_repeat 499 544
IPR002885 Pentatricopeptide_repeat 218 245
IPR002885 Pentatricopeptide_repeat 117 142
IPR002885 Pentatricopeptide_repeat 183 212
IPR002885 Pentatricopeptide_repeat 318 349
No external refs found!