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  5. LOC_Os12g01430.1

LOC_Os12g01430.1


Description : pre-60S subunit nuclear export factor (MRT4)


Gene families : OG0004872 (Archaeplastida) Phylogenetic Tree(s): OG0004872_tree ,
OG_05_0006259 (LandPlants) Phylogenetic Tree(s): OG_05_0006259_tree ,
OG_06_0006637 (SeedPlants) Phylogenetic Tree(s): OG_06_0006637_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g01430.1
Cluster HCCA: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
AT1G25260 No alias Ribosomal protein L10 family protein 0.07 Archaeplastida
Cre06.g261700 No alias No description available 0.04 Archaeplastida
GSVIVT01023018001 No alias No description available 0.07 Archaeplastida
MA_125848g0010 No alias pre-60S subunit nuclear export factor (MRT4) 0.04 Archaeplastida
Mp2g07300.1 No alias pre-60S subunit nuclear export factor (MRT4) 0.02 Archaeplastida
Pp3c11_25500V3.1 No alias Ribosomal protein L10 family protein 0.03 Archaeplastida
Pp3s128_30V3.1 No alias Ribosomal protein L10 family protein 0.03 Archaeplastida
Smo164004 No alias No description available 0.05 Archaeplastida
Solyc01g104470.3.1 No alias pre-60S subunit nuclear export factor (MRT4) 0.03 Archaeplastida
Zm00001e009295_P001 No alias pre-60S subunit nuclear export factor (MRT4) 0.11 Archaeplastida
Zm00001e020823_P001 No alias pre-60S subunit nuclear export factor (MRT4) 0.09 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
MF GO:0002161 aminoacyl-tRNA editing activity IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001790 Ribosomal_L10P 22 121
No external refs found!