LOC_Os12g12850.1

Description : chaperone component ClpC of chloroplast Clp-type protease complex

Gene families : OG0000276 (Archaeplastida) Phylogenetic Tree(s): OG0000276_tree ,
OG_05_0002249 (LandPlants) Phylogenetic Tree(s): OG_05_0002249_tree ,
OG_06_0002384 (SeedPlants) Phylogenetic Tree(s): OG_06_0002384_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os12g12850.1
Cluster	HCCA: Cluster_256

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00164160	evm_27.TU.AmTr_v1...	External stimuli response.temperature.Hsp...	0.03	Archaeplastida
AMTR_s00110p00042430	evm_27.TU.AmTr_v1...	External stimuli response.temperature.Hsp...	0.04	Archaeplastida
AT5G15450	CLPB3, CLPB-P, APG6	casein lytic proteinase B3	0.03	Archaeplastida
AT5G50920	HSP93-V, DCA1,...	CLPC homologue 1	0.05	Archaeplastida
Cre43.g760497	No alias	Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01008636001	No alias	External stimuli response.temperature.Hsp...	0.03	Archaeplastida
MA_229920g0010	No alias	Chaperone protein ClpB2, chloroplastic OS=Oryza sativa...	0.04	Archaeplastida
MA_8117g0010	No alias	ATP-dependent Clp protease ATP-binding subunit ClpA...	0.04	Archaeplastida
Pp3c21_5430V3.1	No alias	Clp ATPase	0.02	Archaeplastida
Pp3c25_7180V3.1	No alias	CLPC homologue 1	0.03	Archaeplastida
Pp3c3_18360V3.1	No alias	CLPC homologue 1	0.04	Archaeplastida
Pp3c5_23010V3.1	No alias	CLPC homologue 1	0.03	Archaeplastida
Pp3c6_7360V3.1	No alias	CLPC homologue 1	0.02	Archaeplastida
Smo439163	No alias	External stimuli response.temperature.Hsp...	0.03	Archaeplastida
Solyc12g042060.3.1	No alias	chaperone component ClpC of chloroplast Clp-type protease complex	0.03	Archaeplastida
Zm00001e008312_P001	No alias	chaperone component ClpC of chloroplast Clp-type protease complex	0.02	Archaeplastida
Zm00001e014692_P001	No alias	chaperone component ClpD of chloroplast Clp-type protease complex	0.02	Archaeplastida
Zm00001e039805_P002	No alias	chaperone component ClpC of chloroplast Clp-type protease complex	0.12	Archaeplastida
Zm00001e040778_P001	No alias	chaperone component ClpC of chloroplast Clp-type protease complex	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
BP	GO:0006066	alcohol metabolic process	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
BP	GO:0016311	dephosphorylation	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
BP	GO:0017004	cytochrome complex assembly	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
BP	GO:0019751	polyol metabolic process	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
BP	GO:0043647	inositol phosphate metabolic process	IEP	Neighborhood
BP	GO:0044282	small molecule catabolic process	IEP	Neighborhood
BP	GO:0046164	alcohol catabolic process	IEP	Neighborhood
BP	GO:0046174	polyol catabolic process	IEP	Neighborhood
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	Neighborhood
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
BP	GO:0071545	inositol phosphate catabolic process	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004176	Clp_N	179	230
IPR004176	Clp_N	103	155
IPR003959	ATPase_AAA_core	294	410
IPR003959	ATPase_AAA_core	631	805
IPR019489	Clp_ATPase_C	812	891

External Links

No external refs found!

LOC_Os12g12850.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation