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  5. LOC_Os12g19030.1

LOC_Os12g19030.1


Description : RING-HC-class E3 ligase. ligating E3 protein (RGLG)


Gene families : OG0000512 (Archaeplastida) Phylogenetic Tree(s): OG0000512_tree ,
OG_05_0000782 (LandPlants) Phylogenetic Tree(s): OG_05_0000782_tree ,
OG_06_0000626 (SeedPlants) Phylogenetic Tree(s): OG_06_0000626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g19030.1
Cluster HCCA: Cluster_266

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00153250 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
AMTR_s00061p00153710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G67800 No alias Copine (Calcium-dependent phospholipid-binding protein) family 0.02 Archaeplastida
AT5G63970 No alias Copine (Calcium-dependent phospholipid-binding protein) family 0.03 Archaeplastida
GSVIVT01002586001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01032380001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01036707001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
LOC_Os09g39190.1 No alias RING-HC-class E3 ligase. ligating E3 protein (RGLG) 0.04 Archaeplastida
MA_10235873g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
Mp6g16390.1 No alias RING-HC-class E3 ligase. ligating E3 protein (RGLG) 0.02 Archaeplastida
Mp6g16430.1 No alias RING-HC-class E3 ligase. ligating E3 protein (RGLG) 0.03 Archaeplastida
Pp3c2_13880V3.1 No alias RING domain ligase1 0.02 Archaeplastida
Zm00001e018895_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e028283_P003 No alias RING-HC-class E3 ligase. ligating E3 protein (RGLG) 0.03 Archaeplastida
Zm00001e028521_P002 No alias RING-HC-class E3 ligase. ligating E3 protein (RGLG) 0.08 Archaeplastida
Zm00001e037447_P002 No alias RING-HC-class E3 ligase. ligating E3 protein (RGLG) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045927 positive regulation of growth IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR010734 Copine 219 433
No external refs found!