1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os12g21930.1

LOC_Os12g21930.1


Description : Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana (sp|q9xim8|pp155_arath : 194.0)


Gene families : OG0000731 (Archaeplastida) Phylogenetic Tree(s): OG0000731_tree ,
OG_05_0000430 (LandPlants) Phylogenetic Tree(s): OG_05_0000430_tree ,
OG_06_0000220 (SeedPlants) Phylogenetic Tree(s): OG_06_0000220_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g21930.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00203030 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.03 Archaeplastida
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.04 Archaeplastida
AT2G15980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G26680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G01110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G40400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G55840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
GSVIVT01008360001 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.02 Archaeplastida
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_03521 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.03 Archaeplastida
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.03 Archaeplastida
LOC_Os03g40690.1 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.01 Archaeplastida
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 Archaeplastida
MA_302333g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.02 Archaeplastida
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.03 Archaeplastida
MA_6175g0010 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.04 Archaeplastida
MA_64750g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc02g021270.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc07g047620.3.1 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.02 Archaeplastida
Zm00001e035584_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006382 adenosine to inosine editing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016553 base conversion or substitution editing IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042274 ribosomal small subunit biogenesis IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 212 260
IPR002885 Pentatricopeptide_repeat 282 331
No external refs found!