LOC_Os12g29520.1

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000395 (LandPlants) Phylogenetic Tree(s): OG_05_0000395_tree ,
OG_06_0002311 (SeedPlants) Phylogenetic Tree(s): OG_06_0002311_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os12g29520.1
Cluster	HCCA: Cluster_312

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00157690	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AMTR_s00057p00141830	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.04	Archaeplastida
AT1G59750	ARF1	auxin response factor 1	0.03	Archaeplastida
GSVIVT01008639001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
GSVIVT01016266001	No alias	Auxin response factor 18 OS=Oryza sativa subsp. japonica	0.04	Archaeplastida
GSVIVT01021553001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
GSVIVT01023149001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.05	Archaeplastida
GSVIVT01025198001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.06	Archaeplastida
GSVIVT01025691001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
GSVIVT01032251001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01035204001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.05	Archaeplastida
Gb_18738	No alias	transcription factor (ARF)	0.07	Archaeplastida
MA_10432580g0010	No alias	transcription factor (ARF)	0.04	Archaeplastida
MA_85955g0020	No alias	transcription factor (ARF)	0.03	Archaeplastida
Smo181406	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
Solyc01g103050.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc03g031970.4.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc04g081240.2.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc07g016180.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc12g042070.3.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e003229_P002	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e006577_P003	No alias	transcription factor (ARF)	0.07	Archaeplastida
Zm00001e006640_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e015164_P002	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e017798_P003	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e018126_P002	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e022728_P002	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e028396_P001	No alias	transcription factor (ARF)	0.12	Archaeplastida
Zm00001e039552_P004	No alias	transcription factor (ARF)	0.12	Archaeplastida
Zm00001e041866_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e041910_P003	No alias	transcription factor (ARF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006486	protein glycosylation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0007186	G-protein coupled receptor signaling pathway	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0043413	macromolecule glycosylation	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
BP	GO:0070085	glycosylation	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	274	356
IPR033389	AUX/IAA_dom	700	798
IPR003340	B3_DNA-bd	148	249

External Links

No external refs found!

LOC_Os12g29520.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation