1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os12g39210.1

LOC_Os12g39210.1


Description : cyclin (CYCA)


Gene families : OG0000635 (Archaeplastida) Phylogenetic Tree(s): OG0000635_tree ,
OG_05_0000438 (LandPlants) Phylogenetic Tree(s): OG_05_0000438_tree ,
OG_06_0000371 (SeedPlants) Phylogenetic Tree(s): OG_06_0000371_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g39210.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272790 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCA-type cyclin 0.16 Archaeplastida
AMTR_s00068p00198800 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.19 Archaeplastida
AT1G44110 CYCA1;1 Cyclin A1;1 0.19 Archaeplastida
AT1G47210 CYCA3;2 cyclin-dependent protein kinase 3;2 0.02 Archaeplastida
AT1G80370 CYCA2;4 Cyclin A2;4 0.1 Archaeplastida
AT5G43080 CYCA3;1 Cyclin A3;1 0.13 Archaeplastida
Cpa|evm.model.tig00000076.67 No alias Cyclin-A2-1 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
Cre03.g207900 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.05 Archaeplastida
GSVIVT01008823001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.18 Archaeplastida
GSVIVT01009399001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.13 Archaeplastida
GSVIVT01035718001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.12 Archaeplastida
Gb_03779 No alias cyclin (CYCA) 0.09 Archaeplastida
Gb_07594 No alias cyclin (CYCA) 0.1 Archaeplastida
Gb_10619 No alias cyclin (CYCA) 0.11 Archaeplastida
Gb_21011 No alias cyclin (CYCA) 0.1 Archaeplastida
LOC_Os12g31810.1 No alias cyclin (CYCA) 0.04 Archaeplastida
MA_103138g0010 No alias cyclin (CYCA) 0.07 Archaeplastida
MA_28323g0010 No alias cyclin (CYCA) 0.1 Archaeplastida
MA_6619g0010 No alias cyclin (CYCA) 0.09 Archaeplastida
MA_88982g0010 No alias cyclin (CYCA) 0.09 Archaeplastida
Mp2g25500.1 No alias cyclin (CYCA) 0.13 Archaeplastida
Pp3c1_38770V3.1 No alias Cyclin A1;1 0.05 Archaeplastida
Pp3c2_8700V3.1 No alias Cyclin A1;1 0.06 Archaeplastida
Pp3c2_8770V3.1 No alias Cyclin A1;1 0.05 Archaeplastida
Pp3c2_9020V3.1 No alias Cyclin A1;1 0.05 Archaeplastida
Smo442428 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.03 Archaeplastida
Smo97411 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.03 Archaeplastida
Solyc03g120440.3.1 No alias cyclin (CYCA) 0.06 Archaeplastida
Solyc04g078310.3.1 No alias cyclin (CYCA) 0.12 Archaeplastida
Solyc06g065680.3.1 No alias cyclin (CYCA) 0.12 Archaeplastida
Solyc11g005090.2.1 No alias cyclin (CYCA) 0.1 Archaeplastida
Solyc12g088470.3.1 No alias cyclin (CYCA) 0.07 Archaeplastida
Solyc12g088500.2.1 No alias cyclin (CYCA) 0.02 Archaeplastida
Solyc12g088520.2.1 No alias cyclin (CYCA) 0.06 Archaeplastida
Zm00001e003049_P002 No alias cyclin (CYCA) 0.12 Archaeplastida
Zm00001e005138_P001 No alias cyclin (CYCA) 0.14 Archaeplastida
Zm00001e012454_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e013250_P002 No alias cyclin (CYCA) 0.09 Archaeplastida
Zm00001e017335_P001 No alias cyclin (CYCA) 0.15 Archaeplastida
Zm00001e017993_P001 No alias cyclin (CYCA) 0.08 Archaeplastida
Zm00001e026125_P002 No alias cyclin (CYCA) 0.06 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 249 371
IPR006671 Cyclin_N 118 246
No external refs found!