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  5. LOC_Os12g41890.1

LOC_Os12g41890.1


Description : cationic amino acid transporter (CAT)


Gene families : OG0000547 (Archaeplastida) Phylogenetic Tree(s): OG0000547_tree ,
OG_05_0000855 (LandPlants) Phylogenetic Tree(s): OG_05_0000855_tree ,
OG_06_0000604 (SeedPlants) Phylogenetic Tree(s): OG_06_0000604_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g41890.1
Cluster HCCA: Cluster_657

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00114p00137590 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.03 Archaeplastida
GSVIVT01003684001 No alias Solute transport.carrier-mediated transport.APC... 0.04 Archaeplastida
MA_9363g0010 No alias cationic amino acid transporter (CAT) 0.07 Archaeplastida
Solyc02g081850.4.1 No alias cationic amino acid transporter (CAT) 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0019321 pentose metabolic process IEP Neighborhood
BP GO:0019566 arabinose metabolic process IEP Neighborhood
BP GO:0046373 L-arabinose metabolic process IEP Neighborhood
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002293 AA/rel_permease1 78 454
IPR029485 CAT_C 520 570
No external refs found!