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  5. LOC_Os12g42140.1

LOC_Os12g42140.1


Description : STIPL spliceosome disassembly factor


Gene families : OG0003471 (Archaeplastida) Phylogenetic Tree(s): OG0003471_tree ,
OG_05_0003246 (LandPlants) Phylogenetic Tree(s): OG_05_0003246_tree ,
OG_06_0004880 (SeedPlants) Phylogenetic Tree(s): OG_06_0004880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g42140.1
Cluster HCCA: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01024262001 No alias RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
Pp3c22_1760V3.1 No alias GC-rich sequence DNA-binding factor-like protein with... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006623 protein targeting to vacuole IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009411 response to UV IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
MF GO:0050080 malonyl-CoA decarboxylase activity IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072665 protein localization to vacuole IEP Neighborhood
BP GO:0072666 establishment of protein localization to vacuole IEP Neighborhood
MF GO:0106073 dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR022783 GCFC_dom 400 670
IPR000467 G_patch_dom 184 224
IPR022159 STIP/TFIP11_N 7 99
No external refs found!