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  5. Smo101239

Smo101239


Description : Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo101239
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.04 Archaeplastida
AMTR_s00008p00241920 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.02 Archaeplastida
AMTR_s00056p00185560 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
AMTR_s02193p00008230 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.03 Archaeplastida
AT2G04860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Gb_15639 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Gb_36839 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_38938 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
LOC_Os01g27650.1 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
LOC_Os03g32620.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os04g14450.1 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.03 Archaeplastida
LOC_Os05g38190.2 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
LOC_Os07g39090.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os12g15460.1 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.02 Archaeplastida
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Pp3c14_16110V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Solyc03g051780.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc03g098420.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc04g005770.3.1 No alias Pentatricopeptide repeat-containing protein At2g02750... 0.02 Archaeplastida
Solyc07g008480.3.1 No alias Pentatricopeptide repeat-containing protein At3g14730... 0.03 Archaeplastida
Solyc09g090220.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e014825_P001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0050897 cobalt ion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 268 316
No external refs found!