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  4. Sequence
  5. Smo109200

Smo109200


Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.STIPL disassembly factor


Gene families : OG0003471 (Archaeplastida) Phylogenetic Tree(s): OG0003471_tree ,
OG_05_0003246 (LandPlants) Phylogenetic Tree(s): OG_05_0003246_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo109200
Cluster HCCA: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00133670 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
AT1G17070 No alias GC-rich sequence DNA-binding factor-like protein with... 0.03 Archaeplastida
Cre07.g325713 No alias RNA processing.RNA splicing.spliceosome... 0.04 Archaeplastida
Gb_12223 No alias STIPL spliceosome disassembly factor 0.04 Archaeplastida
Mp3g24100.1 No alias STIPL spliceosome disassembly factor 0.02 Archaeplastida
Solyc10g005990.4.1 No alias STIPL spliceosome disassembly factor 0.02 Archaeplastida
Zm00001e018105_P001 No alias STIPL spliceosome disassembly factor 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
InterPro domains Description Start Stop
IPR022783 GCFC_dom 352 620
No external refs found!