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  5. Smo121399

Smo121399


Description : Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana


Gene families : OG0005947 (Archaeplastida) Phylogenetic Tree(s): OG0005947_tree ,
OG_05_0013614 (LandPlants) Phylogenetic Tree(s): OG_05_0013614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo121399
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
AT4G20740 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
LOC_Os06g13950.1 No alias Pentatricopeptide repeat-containing protein At3g61520,... 0.04 Archaeplastida
Solyc01g068180.3.1 No alias Pentatricopeptide repeat-containing protein At4g20740... 0.02 Archaeplastida
Zm00001e030912_P001 No alias Pentatricopeptide repeat-containing protein At3g61520,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Neighborhood
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Neighborhood
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 88 118
No external refs found!