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  5. AMTR_s00013p00114420

AMTR_s00013p00114420 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00013.57

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00114420
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00217560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
GSVIVT01012250001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01021534001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01036551001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
Gb_05128 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os02g36924.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g22540.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os07g01820.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
MA_10432602g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_130755g0010 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
MA_16629g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc01g106720.1.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Solyc06g059970.4.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.04 Archaeplastida
Solyc08g080100.4.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc10g080030.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc12g038510.2.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e000167_P005 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e007902_P001 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e015447_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e027031_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e030373_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e036159_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 9 59
No external refs found!