Smo139717


Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.NUP98 nucleoporin


Gene families : OG0001288 (Archaeplastida) Phylogenetic Tree(s): OG0001288_tree ,
OG_05_0004660 (LandPlants) Phylogenetic Tree(s): OG_05_0004660_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo139717
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01019716001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 Archaeplastida
GSVIVT01031347001 No alias Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana 0.01 Archaeplastida
Gb_29033 No alias NUP96 scaffold nucleoporin of nuclear pore complex 0.02 Archaeplastida
MA_10434126g0020 No alias NUP96 scaffold nucleoporin of nuclear pore complex 0.03 Archaeplastida
MA_62342g0010 No alias NUP98 nucleoporin of nuclear pore complex 0.02 Archaeplastida
Mp2g01050.1 No alias NUP96 scaffold nucleoporin of nuclear pore complex.... 0.02 Archaeplastida
Pp3c26_7720V3.1 No alias SUPPRESSOR OF AUXIN RESISTANCE 3 0.02 Archaeplastida
Pp3c3_17910V3.1 No alias Nucleoporin autopeptidase 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004371 glycerone kinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
MF GO:0008658 penicillin binding IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
MF GO:0033293 monocarboxylic acid binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR021967 Nup96 540 820
No external refs found!