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  5. Smo148966

Smo148966


Description : Vesicle trafficking.endomembrane trafficking.trans-Golgi-network (TGN) trafficking.YPT protein


Gene families : OG0003166 (Archaeplastida) Phylogenetic Tree(s): OG0003166_tree ,
OG_05_0003775 (LandPlants) Phylogenetic Tree(s): OG_05_0003775_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo148966
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
Zm00001e019161_P001 No alias YPT protein of trans-Golgi-network (TGN) trafficking 0.06 Archaeplastida
Zm00001e028666_P001 No alias YPT protein of trans-Golgi-network (TGN) trafficking 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
BP GO:0009229 thiamine diphosphate biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0035434 copper ion transmembrane transport IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0042357 thiamine diphosphate metabolic process IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR006977 Yip1 115 266
No external refs found!