- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Snu13 component
Gene families : OG0001139 (Archaeplastida) Phylogenetic Tree(s): OG0001139_tree ,
OG_05_0004101 (LandPlants) Phylogenetic Tree(s): OG_05_0004101_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo159569 | |
| Cluster | HCCA: Cluster_183 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G12600 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.05 | Archaeplastida | |
| AT5G08180 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.02 | Archaeplastida | |
| AT5G20160 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.02 | Archaeplastida | |
| Cre06.g249250 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.03 | Archaeplastida | |
| LOC_Os03g13800.1 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.02 | Archaeplastida | |
| LOC_Os06g16290.1 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.06 | Archaeplastida | |
| MA_16906g0010 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.04 | Archaeplastida | |
| MA_433779g0010 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.03 | Archaeplastida | |
| MA_99460g0010 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.04 | Archaeplastida | |
| Pp3c15_25080V3.1 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.02 | Archaeplastida | |
| Pp3c17_18010V3.1 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.03 | Archaeplastida | |
| Pp3c9_25980V3.1 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.05 | Archaeplastida | |
| Solyc12g038980.2.1 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.03 | Archaeplastida | |
| Zm00001e015712_P001 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.02 | Archaeplastida | |
| Zm00001e038611_P002 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.07 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| BP | GO:0006412 | translation | IEP | Neighborhood |
| BP | GO:0006457 | protein folding | IEP | Neighborhood |
| BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
| CC | GO:0008250 | oligosaccharyltransferase complex | IEP | Neighborhood |
| BP | GO:0034220 | ion transmembrane transport | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
| CC | GO:0044432 | endoplasmic reticulum part | IEP | Neighborhood |
| MF | GO:0047429 | nucleoside-triphosphate diphosphatase activity | IEP | Neighborhood |
| CC | GO:1902494 | catalytic complex | IEP | Neighborhood |
| CC | GO:1990234 | transferase complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004038 | Ribosomal_L7Ae/L30e/S12e/Gad45 | 21 | 110 |
| No external refs found! |