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Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL13 component
Gene families : OG0002427 (Archaeplastida) Phylogenetic Tree(s): OG0002427_tree ,
OG_05_0002444 (LandPlants) Phylogenetic Tree(s): OG_05_0002444_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo165483 | |
| Cluster | HCCA: Cluster_178 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00022p00239970 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.09 | Archaeplastida | |
| AMTR_s00029p00111280 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.05 | Archaeplastida | |
| AT3G49010 | BBC1, RSU2, ATBBC1 | breast basic conserved 1 | 0.14 | Archaeplastida | |
| AT5G23900 | No alias | Ribosomal protein L13e family protein | 0.05 | Archaeplastida | |
| Cpa|evm.model.tig00020629.36 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.12 | Archaeplastida | |
| Cre14.g630100 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.04 | Archaeplastida | |
| GSVIVT01027212001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.12 | Archaeplastida | |
| GSVIVT01030767001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.12 | Archaeplastida | |
| LOC_Os03g37970.1 | No alias | component RPL13 of LSU proteome component | 0.04 | Archaeplastida | |
| LOC_Os06g02510.2 | No alias | component RPL13 of LSU proteome component | 0.11 | Archaeplastida | |
| MA_103031g0010 | No alias | no hits & (original description: none) | 0.1 | Archaeplastida | |
| MA_10430790g0030 | No alias | component RPL13 of LSU proteome component | 0.03 | Archaeplastida | |
| Mp1g04920.1 | No alias | component RPL13 of LSU proteome component | 0.14 | Archaeplastida | |
| Mp2g19790.1 | No alias | component RPL13 of LSU proteome component | 0.14 | Archaeplastida | |
| Pp3c10_7370V3.1 | No alias | breast basic conserved 1 | 0.04 | Archaeplastida | |
| Pp3c13_15900V3.1 | No alias | breast basic conserved 1 | 0.1 | Archaeplastida | |
| Pp3c1_26280V3.1 | No alias | breast basic conserved 1 | 0.15 | Archaeplastida | |
| Pp3c3_21130V3.1 | No alias | breast basic conserved 1 | 0.05 | Archaeplastida | |
| Solyc08g075700.3.1 | No alias | component RPL13 of LSU proteome component | 0.15 | Archaeplastida | |
| Solyc12g096150.2.1 | No alias | component RPL13 of LSU proteome component | 0.12 | Archaeplastida | |
| Zm00001e018804_P001 | No alias | component RPL13 of LSU proteome component | 0.12 | Archaeplastida | |
| Zm00001e028430_P003 | No alias | component RPL13 of LSU proteome component | 0.1 | Archaeplastida | |
| Zm00001e031172_P001 | No alias | component RPL13 of LSU proteome component | 0.07 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005622 | intracellular | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000030 | mannosyltransferase activity | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| BP | GO:0006412 | translation | IEP | Neighborhood |
| BP | GO:0006413 | translational initiation | IEP | Neighborhood |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | Neighborhood |
| BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
| BP | GO:0007034 | vacuolar transport | IEP | Neighborhood |
| BP | GO:0009056 | catabolic process | IEP | Neighborhood |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | Neighborhood |
| CC | GO:0030684 | preribosome | IEP | Neighborhood |
| CC | GO:0030688 | preribosome, small subunit precursor | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | Neighborhood |
| BP | GO:0044248 | cellular catabolic process | IEP | Neighborhood |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Neighborhood |
| BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Neighborhood |
| BP | GO:1901575 | organic substance catabolic process | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001380 | Ribosomal_L13e | 7 | 185 |
| No external refs found! |