1. Home
  2. Species
  3. Selaginella moellendorffii
  4. Sequence
  5. Smo166700

Smo166700


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL27 component


Gene families : OG0002403 (Archaeplastida) Phylogenetic Tree(s): OG0002403_tree ,
OG_05_0002938 (LandPlants) Phylogenetic Tree(s): OG_05_0002938_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo166700
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00176990 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
AMTR_s00045p00086530 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
AT3G22230 No alias Ribosomal L27e protein family 0.24 Archaeplastida
AT4G15000 No alias Ribosomal L27e protein family 0.24 Archaeplastida
Cpa|evm.model.tig00021275.23 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
Cre17.g701650 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 Archaeplastida
GSVIVT01012080001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
GSVIVT01020410001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
Gb_34700 No alias component RPL27 of LSU proteome component 0.03 Archaeplastida
Gb_36674 No alias component RPL27 of LSU proteome component 0.11 Archaeplastida
LOC_Os02g18380.1 No alias component RPL27 of LSU proteome component 0.06 Archaeplastida
LOC_Os10g41470.1 No alias component RPL27 of LSU proteome component 0.07 Archaeplastida
MA_10034g0010 No alias component RPL27 of LSU proteome component 0.05 Archaeplastida
MA_3390g0010 No alias component RPL27 of LSU proteome component 0.16 Archaeplastida
Mp4g23910.1 No alias component RPL27 of LSU proteome component 0.19 Archaeplastida
Pp3c15_4610V3.1 No alias Ribosomal L27e protein family 0.21 Archaeplastida
Pp3c24_20290V3.1 No alias Ribosomal L27e protein family 0.16 Archaeplastida
Pp3c8_24410V3.1 No alias Ribosomal L27e protein family 0.16 Archaeplastida
Solyc06g073300.1.1 No alias component RPL27 of LSU proteome component 0.15 Archaeplastida
Solyc07g043360.1.1 No alias component RPL27 of LSU proteome component 0.08 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
CC GO:0030008 TRAPP complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001141 Ribosomal_L27e 51 134
No external refs found!