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  4. Sequence
  5. Smo167367

Smo167367


Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop56 snoRNP scaffold component


Gene families : OG0004202 (Archaeplastida) Phylogenetic Tree(s): OG0004202_tree ,
OG_05_0004640 (LandPlants) Phylogenetic Tree(s): OG_05_0004640_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo167367
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00226680 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.02 Archaeplastida
AT1G56110 NOP56 homolog of nucleolar protein NOP56 0.11 Archaeplastida
AT3G12860 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 Archaeplastida
Cpa|evm.model.tig00001073.20 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 Archaeplastida
Cre12.g525200 No alias RNA processing.RNA modification.rRNA/tRNA... 0.07 Archaeplastida
GSVIVT01008506001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.1 Archaeplastida
Gb_05243 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.05 Archaeplastida
LOC_Os03g22880.1 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.05 Archaeplastida
MA_10434077g0010 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.04 Archaeplastida
Mp2g23840.1 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.05 Archaeplastida
Pp3c16_5220V3.1 No alias homolog of nucleolar protein NOP56 0.02 Archaeplastida
Solyc01g100570.4.1 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.07 Archaeplastida
Zm00001e001676_P001 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.08 Archaeplastida
Zm00001e038196_P002 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR012974 NOP5_N 13 78
No external refs found!