Smo168290

Description : RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase

Gene families : OG0008229 (Archaeplastida) Phylogenetic Tree(s): OG0008229_tree ,
OG_05_0008188 (LandPlants) Phylogenetic Tree(s): OG_05_0008188_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo168290
Cluster	HCCA: Cluster_125

Target	Alias	Description	ECC score	Gene Family Method	Actions
GSVIVT01016310001	No alias	RNA processing.RNA...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Neighborhood
BP	GO:0010639	negative regulation of organelle organization	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0030832	regulation of actin filament length	IEP	Neighborhood
BP	GO:0030833	regulation of actin filament polymerization	IEP	Neighborhood
BP	GO:0030834	regulation of actin filament depolymerization	IEP	Neighborhood
BP	GO:0030835	negative regulation of actin filament depolymerization	IEP	Neighborhood
BP	GO:0030837	negative regulation of actin filament polymerization	IEP	Neighborhood
BP	GO:0031333	negative regulation of protein complex assembly	IEP	Neighborhood
BP	GO:0032271	regulation of protein polymerization	IEP	Neighborhood
BP	GO:0032272	negative regulation of protein polymerization	IEP	Neighborhood
BP	GO:0032535	regulation of cellular component size	IEP	Neighborhood
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Neighborhood
BP	GO:0032970	regulation of actin filament-based process	IEP	Neighborhood
BP	GO:0033043	regulation of organelle organization	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
BP	GO:0043242	negative regulation of protein complex disassembly	IEP	Neighborhood
BP	GO:0043244	regulation of protein complex disassembly	IEP	Neighborhood
BP	GO:0043254	regulation of protein complex assembly	IEP	Neighborhood
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
BP	GO:0048523	negative regulation of cellular process	IEP	Neighborhood
BP	GO:0051016	barbed-end actin filament capping	IEP	Neighborhood
BP	GO:0051128	regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051129	negative regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051493	regulation of cytoskeleton organization	IEP	Neighborhood
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	Neighborhood
BP	GO:0051693	actin filament capping	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0090066	regulation of anatomical structure size	IEP	Neighborhood
BP	GO:0110053	regulation of actin filament organization	IEP	Neighborhood
BP	GO:1901879	regulation of protein depolymerization	IEP	Neighborhood
BP	GO:1901880	negative regulation of protein depolymerization	IEP	Neighborhood
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Neighborhood
BP	GO:1902904	negative regulation of supramolecular fiber organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006145	PsdUridine_synth_RsuA/RluD	175	276

External Links

No external refs found!

Smo168290

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation