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  5. Smo170205

Smo170205


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS28 component


Gene families : OG0003817 (Archaeplastida) Phylogenetic Tree(s): OG0003817_tree ,
OG_05_0003626 (LandPlants) Phylogenetic Tree(s): OG_05_0003626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo170205
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AT3G10090 No alias Nucleic acid-binding, OB-fold-like protein 0.02 Archaeplastida
AT5G03850 No alias Nucleic acid-binding, OB-fold-like protein 0.02 Archaeplastida
AT5G64140 RPS28 ribosomal protein S28 0.04 Archaeplastida
Cpa|evm.model.tig00000194.27 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 Archaeplastida
Cre12.g510450 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 Archaeplastida
GSVIVT01033420001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
LOC_Os10g27174.1 No alias component RPS28 of SSU proteome 0.05 Archaeplastida
MA_10206328g0010 No alias component RPS28 of SSU proteome 0.09 Archaeplastida
Mp3g15160.1 No alias component RPS28 of SSU proteome 0.03 Archaeplastida
Pp3c14_19610V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.09 Archaeplastida
Pp3c17_13300V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.05 Archaeplastida
Pp3c1_28770V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.1 Archaeplastida
Pp3c5_6000V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.06 Archaeplastida
Pp3c6_27040V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.02 Archaeplastida
Solyc02g021400.2.1 No alias component RPS28 of SSU proteome 0.02 Archaeplastida
Zm00001e000507_P001 No alias component RPS28 of SSU proteome 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003714 transcription corepressor activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000289 Ribosomal_S28e 3 64
No external refs found!