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  5. AMTR_s00013p00255370

AMTR_s00013p00255370 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00013.244

Description : RNA biosynthesis.transcriptional repression.AFP/NINJA transcriptional co-repressor


Gene families : OG0000721 (Archaeplastida) Phylogenetic Tree(s): OG0000721_tree ,
OG_05_0000424 (LandPlants) Phylogenetic Tree(s): OG_05_0000424_tree ,
OG_06_0000404 (SeedPlants) Phylogenetic Tree(s): OG_06_0000404_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00255370
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT1G69260 AFP1 ABI five binding protein 0.06 Archaeplastida
AT3G02140 AFP4, TMAC2 AFP2 (ABI five-binding protein 2) family protein 0.03 Archaeplastida
AT3G29575 AFP3 ABI five binding protein 3 0.05 Archaeplastida
GSVIVT01003927001 No alias RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.03 Archaeplastida
LOC_Os01g68820.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os07g41160.1 No alias transcriptional co-repressor (AFP/NINJA) 0.03 Archaeplastida
Solyc04g005380.3.1 No alias transcriptional co-repressor (AFP/NINJA) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004806 triglyceride lipase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR012463 Ninja_motif 397 508
No external refs found!