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Description : RNA processing.RNA modification.dihydrouridylation.tRNA dihydrouridine synthase
Gene families : OG0006217 (Archaeplastida) Phylogenetic Tree(s): OG0006217_tree ,
OG_05_0005715 (LandPlants) Phylogenetic Tree(s): OG_05_0005715_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo174143 | |
| Cluster | HCCA: Cluster_163 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G49640 | No alias | Aldolase-type TIM barrel family protein | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000075 | cell cycle checkpoint | IEP | Neighborhood |
| BP | GO:0000077 | DNA damage checkpoint | IEP | Neighborhood |
| MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
| MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
| MF | GO:0004529 | exodeoxyribonuclease activity | IEP | Neighborhood |
| MF | GO:0004536 | deoxyribonuclease activity | IEP | Neighborhood |
| MF | GO:0005543 | phospholipid binding | IEP | Neighborhood |
| BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
| BP | GO:0006281 | DNA repair | IEP | Neighborhood |
| BP | GO:0006950 | response to stress | IEP | Neighborhood |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Neighborhood |
| BP | GO:0006996 | organelle organization | IEP | Neighborhood |
| BP | GO:0007030 | Golgi organization | IEP | Neighborhood |
| MF | GO:0008289 | lipid binding | IEP | Neighborhood |
| MF | GO:0008297 | single-stranded DNA exodeoxyribonuclease activity | IEP | Neighborhood |
| MF | GO:0008409 | 5'-3' exonuclease activity | IEP | Neighborhood |
| MF | GO:0008417 | fucosyltransferase activity | IEP | Neighborhood |
| BP | GO:0016192 | vesicle-mediated transport | IEP | Neighborhood |
| MF | GO:0016796 | exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Neighborhood |
| MF | GO:0016895 | exodeoxyribonuclease activity, producing 5'-phosphomonoesters | IEP | Neighborhood |
| BP | GO:0031570 | DNA integrity checkpoint | IEP | Neighborhood |
| BP | GO:0033554 | cellular response to stress | IEP | Neighborhood |
| MF | GO:0035091 | phosphatidylinositol binding | IEP | Neighborhood |
| MF | GO:0035312 | 5'-3' exodeoxyribonuclease activity | IEP | Neighborhood |
| CC | GO:0042765 | GPI-anchor transamidase complex | IEP | Neighborhood |
| CC | GO:0044432 | endoplasmic reticulum part | IEP | Neighborhood |
| MF | GO:0045145 | single-stranded DNA 5'-3' exodeoxyribonuclease activity | IEP | Neighborhood |
| BP | GO:0045786 | negative regulation of cell cycle | IEP | Neighborhood |
| BP | GO:0048519 | negative regulation of biological process | IEP | Neighborhood |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Neighborhood |
| BP | GO:0050896 | response to stimulus | IEP | Neighborhood |
| BP | GO:0051716 | cellular response to stimulus | IEP | Neighborhood |
| BP | GO:0051726 | regulation of cell cycle | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001269 | tRNA_hU_synthase | 12 | 254 |
| No external refs found! |